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Status
Public on Aug 07, 2008
Title
NuGO array (human) NuGO_Hs1a520180 [CDF: Hs_ENTREZG_10]
Technology type
in situ oligonucleotide
Distribution
custom-commercial
Organism
Homo sapiens
Manufacturer
Affymetrix
Manufacture protocol
This array is identical to GPL7020 but a custom, remapped CDF environment is used to extract data. This is version 10 of the remapped CDF (see supplementary file linked below). The CDF for various platforms can be found at the Web link below.
Description
CDF file was created by Microarray Lab at the Molecular and Behavioral Neuroscience Institute at the University of Michigan. Oligonucleotide probes on GeneChips were reorganized based on the latest genome and transcriptome information. In this particular case the Entrez Gene database (build: Sept 11, 2006) was used as source. For the CDF file based on Entrez Gene: A probe must hit only one genomic location; Probes that can be mapped to the same target sequence in the correct direction are grouped together in the same probe set; Each probe set must contain at least three oligonucleotide probes and probes in a set are ordered according to their location in the corresponding exon. For detailed description please see the paper and website.
Web link
http://brainarray.mbni.med.umich.edu/Brainarray/Database/CustomCDF/CDF_download.asp
Citation(s)
16284200
Submission date
Aug 06, 2008
Last update date
Oct 24, 2011
Contact name
Guido Hooiveld
E-mail(s)
[email protected]
Organization name
Wageningen University
Department
Div. Human Nutrition & Health
Lab
Nutrition, Metabolism & Genomics Group
Street address
HELIX, Stippeneng 4
City
Wageningen
ZIP/Postal code
NL-6708WE
Country
Netherlands
Samples (218)
GSM310640 , GSM310641 , GSM310642 , GSM310643 , GSM310644 , GSM310645
GSM310646 ,
GSM310647 ,
GSM310648 ,
GSM310649 ,
GSM310650 ,
GSM310651 ,
GSM310652 ,
GSM310653 ,
GSM310654 ,
GSM310655 ,
GSM310656 ,
GSM310657 ,
GSM310658 ,
GSM310659 ,
GSM310660 ,
GSM310661 ,
GSM310662 ,
GSM310663 ,
GSM310664 ,
GSM310665 ,
GSM310666 ,
GSM310667 ,
GSM310668 ,
GSM310669 ,
GSM310670 ,
GSM310671 ,
GSM310672 ,
GSM310673 ,
GSM310674 ,
GSM310675 ,
GSM310676 ,
GSM310677 ,
GSM310678 ,
GSM310679 ,
GSM310680 ,
GSM310681 ,
GSM310682 ,
GSM310683 ,
GSM310684 ,
GSM310685 ,
GSM310686 ,
GSM310687 ,
GSM310688 ,
GSM310689 ,
GSM310690 ,
GSM310691 ,
GSM310692 ,
GSM310693 ,
GSM310694 ,
GSM310695 ,
GSM310696 ,
GSM310697 ,
GSM310698 ,
GSM310699 ,
GSM310700 ,
GSM310701 ,
GSM310702 ,
GSM310703 ,
GSM310704 ,
GSM310705 ,
GSM310706 ,
GSM310707 ,
GSM310708 ,
GSM310709 ,
GSM310710 ,
GSM310711 ,
GSM310712 ,
GSM310713 ,
GSM310714 ,
GSM310715 ,
GSM310716 ,
GSM310717 ,
GSM310718 ,
GSM310719 ,
GSM310720 ,
GSM310721 ,
GSM310722 ,
GSM310723 ,
GSM310724 ,
GSM310725 ,
GSM310726 ,
GSM310727 ,
GSM310728 ,
GSM310729 ,
GSM310730 ,
GSM310731 ,
GSM310732 ,
GSM310733 ,
GSM310734 ,
GSM310735 ,
GSM339455 ,
GSM339456 ,
GSM339457 ,
GSM339458 ,
GSM339459 ,
GSM339460 ,
GSM339461 ,
GSM339462 ,
GSM339463 ,
GSM339464 ,
GSM339465 ,
GSM339466 ,
GSM339467 ,
GSM339468 ,
GSM339469 ,
GSM339470 ,
GSM339471 ,
GSM339472 ,
GSM339473 ,
GSM339474 ,
GSM339475 ,
GSM339476 ,
GSM339477 ,
GSM339478 ,
GSM339479 ,
GSM339480 ,
GSM339481 ,
GSM339482 ,
GSM339483 ,
GSM339484 ,
GSM339485 ,
GSM339486 ,
GSM339487 ,
GSM339488 ,
GSM339489 ,
GSM339490 ,
GSM339491 ,
GSM339492 ,
GSM339493 ,
GSM339494 ,
GSM339495 ,
GSM339496 ,
GSM339497 ,
GSM339498 ,
GSM339499 ,
GSM339500 ,
GSM339501 ,
GSM339502 ,
GSM339503 ,
GSM339504 ,
GSM339505 ,
GSM339506 ,
GSM339507 ,
GSM339508 ,
GSM339509 ,
GSM339510 ,
GSM339511 ,
GSM339512 ,
GSM339513 ,
GSM339514 ,
GSM339515 ,
GSM339516 ,
GSM339517 ,
GSM339518 ,
GSM339519 ,
GSM339520 ,
GSM339521 ,
GSM339522 ,
GSM339523 ,
GSM339524 ,
GSM339525 ,
GSM339526 ,
GSM339527 ,
GSM339528 ,
GSM339529 ,
GSM339530 ,
GSM339531 ,
GSM339532 ,
GSM339533 ,
GSM339534 ,
GSM339535 ,
GSM339536 ,
GSM339537 ,
GSM339538 ,
GSM4913240 ,
GSM4913241 ,
GSM4913242 ,
GSM4913243 ,
GSM4913244 ,
GSM4913245 ,
GSM4913246 ,
GSM4913247 ,
GSM4913248 ,
GSM4913249 ,
GSM4913250 ,
GSM4913251 ,
GSM4913252 ,
GSM4913253 ,
GSM4913254 ,
GSM4913255 ,
GSM4913256 ,
GSM4913257 ,
GSM4913258 ,
GSM4913259 ,
GSM4913260 ,
GSM4913261 ,
GSM4913262 ,
GSM4913263 ,
GSM4913264 ,
GSM4913265 ,
GSM4913266 ,
GSM4913267 ,
GSM4913268 ,
GSM4913269 ,
GSM4913270 ,
GSM4913271 ,
GSM4913272 ,
GSM4913273 ,
GSM4913274 ,
GSM4913275 ,
GSM4913276 ,
GSM4913277
Series (4)
GSE12375
Fish oil supplementation induces anti-atherogenic gene expression profiles in human blood mononuclear cells
GSE13466
Acute effects of different dietary fatty acids on the gene expression profiles of PBMCs of healthy young men
GSE161719
Relationship between insulin sensitivity and gene expression in human skeletal muscle (Study A)
GSE161721
Relationship between insulin sensitivity and gene expression in human skeletal muscle
Relations
Alternative to
GPL7020 (Alternative CDF [official])
Data table header descriptions
ID
ENTREZ_GENE_ID
EntrezGene ID
ORF
ORF Name
Description
Gene Name
SPOT_ID
Control Probe
Data table
ID
ENTREZ_GENE_ID
ORF
Description
SPOT_ID
1_at
1
A1BG
alpha-1-B glycoprotein
10_at
10
NAT2
N-acetyltransferase 2 (arylamine N-acetyltransferase)
100_at
100
ADA
adenosine deaminase
1000_at
1000
CDH2
cadherin 2, type 1, N-cadherin (neuronal)
10001_at
10001
MED6
mediator complex subunit 6
10002_at
10002
NR2E3
nuclear receptor subfamily 2, group E, member 3
10003_at
10003
NAALAD2
N-acetylated alpha-linked acidic dipeptidase 2
10004_at
10004
NAALADL1
N-acetylated alpha-linked acidic dipeptidase-like 1
10005_at
10005
ACOT8
acyl-CoA thioesterase 8
10006_at
10006
ABI1
abl-interactor 1
10007_at
10007
GNPDA1
glucosamine-6-phosphate deaminase 1
10008_at
10008
KCNE3
potassium voltage-gated channel, Isk-related family, member 3
10009_at
10009
ZBTB33
zinc finger and BTB domain containing 33
1001_at
1001
CDH3
cadherin 3, type 1, P-cadherin (placental)
10010_at
10010
TANK
TRAF family member-associated NFKB activator
10011_at
10011
SRA1
steroid receptor RNA activator 1
10013_at
10013
HDAC6
histone deacetylase 6
10014_at
10014
HDAC5
histone deacetylase 5
10015_at
10015
PDCD6IP
programmed cell death 6 interacting protein
10016_at
10016
PDCD6
programmed cell death 6
Total number of rows: 16313 Table truncated, full table size 957 Kbytes .
Supplementary file
Size
Download
File type/resource
GPL7144_HsNuGOHs1a520180_Hs_ENTREZG.cdf.gz
4.8 Mb
(ftp) (http)
CDF