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GEO help: Mouse over screen elements for information. |
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| Status |
Public on Nov 05, 2008 |
| Title |
NimbleGen mouse (mm8) whole genome tiling array 3 of 4 [2007-08-17_MM8_Economy_03] |
| Technology type |
in situ oligonucleotide |
| Distribution |
commercial |
| Organism |
Mus musculus |
| Manufacturer |
Nimblegen Systems Inc. |
| Manufacture protocol |
Mouse whole genome tiling arrays
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| Submission date |
Oct 24, 2008 |
| Last update date |
Jun 05, 2012 |
| Organization |
NimbleGen Systems, Inc. |
| E-mail(s) |
[email protected]
|
| Phone |
608-218-7600
|
| URL |
http://www.nimblegen.com/
|
| Street address |
504 S. Rosa Road
|
| City |
Madison |
| State/province |
WI |
| ZIP/Postal code |
53719 |
| Country |
USA |
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| Samples (29)
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GSM336518, GSM336519, GSM336520, GSM336521, GSM558454, GSM558458
GSM558462, GSM558466, GSM601587, GSM601591, GSM659632, GSM659636, GSM659640, GSM659644, GSM659648, GSM684516, GSM684520, GSM700047, GSM700049, GSM700051, GSM700053, GSM700055, GSM700057, GSM700059, GSM700061, GSM1372711, GSM1372712, GSM1372713, GSM1372714
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| Series (10)
|
| GSE13445 |
Large organized chromatin K9-modifications (LOCKs) distinguish differentiated from embryonic stem cells |
| GSE22475 |
Genome-wide location analysis of Dnmt3a-mediated epigenetic regulation in murine postnatal subventricular zone (SVZ) neural stem cells (NSCs) [NimbleGen] |
| GSE22476 |
Dnmt3a-dependent non-promoter DNA methylation facilitates transcription of neurogenic genes |
| GSE24420 |
Chip-chip from mouse olfactory epithelium (OE) and liver with antibodies against H3K9me3 and H4K20me3 |
| GSE26827 |
Dual functions of Tet1 in transcriptional regulation in mouse embryonic stem cells (ChIP-chip and MeDIP-chip) |
| GSE26833 |
Dual functions of Tet1 in transcriptional regulation in mouse embryonic stem cells |
| GSE27613 |
Genome-wide analysis of 5-hydroxymethylcytosine distribution reveals its dual function in transcriptional regulation in mouse embryonic stem cells |
| GSE28291 |
Genome-scale epigenetic reprogramming during epithelial to mesenchymal transition |
| GSE28581 |
Epigenomic reprogramming during epithelial to mesenchymal transition |
| GSE56990 |
DamID (LmnB1/Dam) Log2 ratios of C57Bl/6 fibroblasts and RAG2-/- pro-B cells. |
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| Data table header descriptions |
| ID |
|
| Chromosome |
Chromosome number for each probe |
| RANGE_GB |
NCBI Build 36.1 RefSeq Assembly |
| SPOT_ID |
|
| RANGE_START |
Position for each probe |
| SEQUENCE |
Sequence for each probe. |
| Data table |
| ID |
Chromosome |
RANGE_GB |
SPOT_ID |
RANGE_START |
SEQUENCE |
| CHR09FS039288784 |
chr9 |
NC_000075.4 |
|
39288784 |
AATTAGCTTTCCTGTTTGATTAATTAAGTACCACTTGTTGGGTTTTATAAA |
| CHR09FS039290175 |
chr9 |
NC_000075.4 |
|
39290175 |
ACTAAAAAGTATTAGTAAATAATGAGAAGAATGAAGATAGGTAAAAGAGAGAAGA |
| CHR09FS039290331 |
chr9 |
NC_000075.4 |
|
39290331 |
TAAGTAGAAAAATTACTAGGAAAGAAAAACTATGACAGTGTTCAGGGAGAGGG |
| CHR09FS039290566 |
chr9 |
NC_000075.4 |
|
39290566 |
TGGACAAGACACTAATAAGCAAATAACAAGCATGAGTTTGGGCTTGATATCTACCAAGCTGTA |
| CHR09FS039290781 |
chr9 |
NC_000075.4 |
|
39290781 |
TAATGGGTTTCACTGTGATACTTTCACCTGTGTATACCATTTTACTATACACGCTCCT |
| CHR09FS039290946 |
chr9 |
NC_000075.4 |
|
39290946 |
TGTTACATACTAGATTTCCTTGAGATGGAGAATGGGAACTAGAGGAGAAGTAAAATCCA |
| CHR09FS039291146 |
chr9 |
NC_000075.4 |
|
39291146 |
TATTAGATACTGAATATTTTAAAACAAGAAAATGGACTTGTTATGGACTTTAAA |
| CHR09FS039291291 |
chr9 |
NC_000075.4 |
|
39291291 |
TAGGGAAGATACTTATACCATTCCTCAGCATTTTCGCTTCCTGTAAAGCTCCTTTAG |
| CHR09FS039291461 |
chr9 |
NC_000075.4 |
|
39291461 |
TATCAGCACAATAATGTAACATCCTTCATCCCACGATATTGGTGCAGGGC |
| CHR09FS039291656 |
chr9 |
NC_000075.4 |
|
39291656 |
AACAGATTTAACAATAATCAAGCATGCTACTTTTAGATATATAAAAGTCTCACTTTAT |
| CHR09FS039291941 |
chr9 |
NC_000075.4 |
|
39291941 |
TGCCTTCTATTTATGAACTAAGAAAGAACACTAAATTAGGATGGGATATATCGTTAA |
| CHR09FS039292101 |
chr9 |
NC_000075.4 |
|
39292101 |
CCCATTTAGAGAAGCACTAGGTTTCTCATCAGTGGAAATTTTGTCACATTCACTCCAT |
| CHR09FS039292351 |
chr9 |
NC_000075.4 |
|
39292351 |
TTGTTTTCTTATTGCATATTGTATATTTGACCATAAATACTTCCTGATTTTCACTGTT |
| CHR09FS039292519 |
chr9 |
NC_000075.4 |
|
39292519 |
GCAGGATCAGAATCTATTGGGTCCCTTAACGTGGGTATCTGTATTACAAGTA |
| CHR09FS039292711 |
chr9 |
NC_000075.4 |
|
39292711 |
GAATAAAGCCAAAGGTTGGATAATTCTACGTGTCACAATGTTAAAATATCCTAAA |
| CHR09FS039292956 |
chr9 |
NC_000075.4 |
|
39292956 |
ACCCCAAGATGAACTCCGAACTCACCATGATAATATTATGGCTTTCTCAGATCCGATATTA |
| CHR09FS039293294 |
chr9 |
NC_000075.4 |
|
39293294 |
TTAAAAGCAAAGGAAAAAGGAGGAGGGAAAATGCTAATGTTGTTACCAGGATCA |
| CHR09FS039293449 |
chr9 |
NC_000075.4 |
|
39293449 |
GCAGGAAATGAAAACAGCAGACATGAGCTACTGAAGTTATTTAGACATGAAAATTTAAGT |
| CHR09FS039293732 |
chr9 |
NC_000075.4 |
|
39293732 |
TAGAAAAGACAGCTAGATAACTAAATTTTTAATTTACAACTTAAAATGACTCT |
| CHR09FS039293826 |
chr9 |
NC_000075.4 |
|
39293826 |
TAGCTCAAAATAAATTTAATATATACATTTTATATGACAAATATTTGAGTTTCTAAA |
Total number of rows: 2161350
Table truncated, full table size 211441 Kbytes.
| Supplementary file |
Size |
Download |
File type/resource |
| GPL7525_2007-08-17_MM8_Economy_03_HX1.ndf.gz |
135.0 Mb |
(ftp)(http) |
NDF |
| GPL7525_2007-08-17_MM8_Economy_03_HX1.pos.gz |
24.4 Mb |
(ftp)(http) |
POS |
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