|
| Status |
Public on Dec 16, 2014 |
| Title |
DamID (LmnB1/Dam) Log2 ratios of C57Bl/6 fibroblasts and RAG2-/- pro-B cells. |
| Organism |
Mus musculus |
| Experiment type |
Genome binding/occupancy profiling by genome tiling array
|
| Summary |
Comparison of DamID profiles and LAD patterning across cell types reveals regions of variable LADs
|
| |
|
| Overall design |
LmnB1 interactions at the nuclear periphery of C57Bl/6 pro-B cells and fibroblasts were identified by DamID in duplicate for both pro-B and fibroblasts (4 samples total). For each sample, Dam-LmnB1/Dam-only Log2 ratios of chromosomes 11 and 12 were calculated, lifted over to mm9, duplicates were normalized and averaged together.
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| |
|
| Contributor(s) |
Harr J, Luperchio TR, Wong X, Cohen E, Wheelan SJ, Reddy KL |
| Citation(s) |
25559185 |
| |
| Submission date |
Apr 23, 2014 |
| Last update date |
Apr 05, 2017 |
| Contact name |
Karen Reddy |
| E-mail(s) |
[email protected]
|
| Organization name |
Johns Hopkins University
|
| Department |
Center for Epigenetics/Biological Chemistry
|
| Street address |
855 North Wolfe Street
|
| City |
Baltimore |
| State/province |
MD |
| ZIP/Postal code |
21205 |
| Country |
USA |
| |
|
| Platforms (1) |
| GPL7525 |
NimbleGen mouse (mm8) whole genome tiling array 3 of 4 [2007-08-17_MM8_Economy_03] |
|
| Samples (4)
|
|
| Relations |
| BioProject |
PRJNA245175 |
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