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GEO help: Mouse over screen elements for information. |
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| Status |
Public on Dec 01, 2009 |
| Title |
VUmc/Illumina Sentrix MouseRef8 v1.1 |
| Technology type |
oligonucleotide beads |
| Distribution |
custom-commercial |
| Organism |
Mus musculus |
| Manufacturer |
Illumina |
| Manufacture protocol |
See manufacturer's website.
|
| Support |
unknown |
| Coating |
unknown |
| |
|
| Description |
Illumina Sentrix MouseRef-8
ServiceXS Beadstudio output list
Similar to GPL6103
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| |
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| Web link |
http://www.illumina.com/
|
| Contributor(s) |
Madeddu P, Horrevoets A |
| Submission date |
Dec 18, 2008 |
| Last update date |
Mar 25, 2019 |
| Contact name |
Anton J Horrevoets |
| URL |
http://www.vumc.nl/afdelingen/moleculairecelbiologie
|
| Organization name |
VU University Medical Center
|
| Department |
Molecular Cell Biology
|
| Lab |
B244
|
| Street address |
van der Boechorststraat 7
|
| City |
Amsterdam |
| ZIP/Postal code |
1081 BT |
| Country |
Netherlands |
| |
|
| Samples (95)
|
GSM352306, GSM352307, GSM352308, GSM352309, GSM352310, GSM352311
GSM352312, GSM352313, GSM523450, GSM523451, GSM523452, GSM523453, GSM523454, GSM523455, GSM523456, GSM523457, GSM530921, GSM530922, GSM530923, GSM530924, GSM530925, GSM530926, GSM530927, GSM530928, GSM530929, GSM530930, GSM530931, GSM530932, GSM530933, GSM530934, GSM530935, GSM530936, GSM530937, GSM530938, GSM530939, GSM530940, GSM530941, GSM530942, GSM530943, GSM719199, GSM719200, GSM719201, GSM719202, GSM719203, GSM719204, GSM719205, GSM719206, GSM719207, GSM719208, GSM719209, GSM719210, GSM719211, GSM719212, GSM719213, GSM719214, GSM1059890, GSM1059891, GSM1059892, GSM1059893, GSM1059894, GSM1059895, GSM1059896, GSM1059897, GSM1059898, GSM1059899, GSM1059900, GSM1059901, GSM1059902, GSM1059903, GSM1059904, GSM1059905, GSM1816474, GSM1816475, GSM1816476, GSM1816477, GSM1816478, GSM1816479, GSM1816480, GSM1816481, GSM1816482, GSM1816483, GSM1816484, GSM1816485, GSM1816486, GSM1816487, GSM1816488, GSM1816489, GSM1816490, GSM1816491, GSM1816492, GSM1816493, GSM1816494, GSM1816495, GSM1816496, GSM1816497
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| Series (6)
|
| GSE14035 |
Diabetic Microangiopathy in the Bone Marrow Causes Hypoperfusion and Depletion of the Stem Cell Niche. |
| GSE20921 |
Differentiation of Mammary Tumors by SKI-606 (bostutinib) (illumina) |
| GSE21237 |
Inhibition of transglutaminase 2 mitigates transcriptional dysregulation in models of Huntington disease |
| GSE29028 |
Mechanisms of urokinase plasminogen activator (uPA)-mediated atherosclerosis |
| GSE43278 |
Cancer-produced metabolites of 5-lipoxygenase induce tumor-evoked Bregs via peroxisome proliferator-activated receptor alpha |
| GSE70689 |
Microarray and Pathway Analysis Reveal Distinct Mechanisms Underlying Cannabinoid-Mediated Modulation of LPS-Induced Activation of BV-2 Microglial Cells |
|
| Data table header descriptions |
| ID |
|
| SYMBOL |
Gene symbol |
| ACCESSION |
NCBI accession number |
| TRANSCRIPT |
Gene Identifier |
| START |
Base number of transcript where oligo starts |
| SEQUENCE |
Oligo sequence |
| GB_ACC |
RefSeq and GenBank accessions |
| CLONE_ID |
Clone identifier |
| ORF |
Gene symbol |
| SPOT_ID |
|
| ONTOLOGY |
GO |
| DEFINITION |
species |
| SYNONYM |
other names for gene |
| TYPE |
sense/anti |
| Data table |
| ID |
SYMBOL |
ACCESSION |
TRANSCRIPT |
START |
SEQUENCE |
GB_ACC |
CLONE_ID |
ORF |
SPOT_ID |
ONTOLOGY |
DEFINITION |
SYNONYM |
TYPE |
| 18S_rRNA_X00686_523-S |
Pigt |
NM_133779.1 |
18S_rRNA_X00686_523 |
2220 |
CAGGACTCTTTCGAGGCCCTGTAATTGGAATGAGTCCACTTTAAATCCTT |
NM_133779.1 |
|
|
|
|
Mus musculus phosphatidylinositol glycan, class T (Pigt), mRNA. |
4930534E15Rik;CGI-06 |
S |
| GI_10304988-S |
St6galnac3 |
NM_011372.1 |
GI_10304988 |
3647 |
GCTCCTGTTGGCCCTGCAGGTACTAGTCCACCGAAAGATTTTATCCACAC |
NM_011372.1 |
|
|
|
go_component: Golgi stack [goid 0005795] [evidence IEA]; go_component: integral to membrane [goid 0016021] [evidence IEA]; go_component: integral to Golgi membrane [goid 0030173] [evidence IEA]; go_function: transferase activity [goid 0016740] [evidence IEA]; go_function: transferase activity, transferring glycosyl groups [goid 0016757] [evidence IEA] |
Mus musculus ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1, 3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 3 (St6galnac3), mRNA. |
Siat7c |
S |
| GI_11079652-S |
L1cam |
NM_008478.2 |
GI_11079652 |
3696 |
CAGTGGCAAGAAAGAGAAGGAGGCAGCAGGAGGCAATGACAGTTCAGGGG |
NM_008478.2 |
|
|
|
go_component: plasma membrane [goid 0005886] [evidence IEA]; go_component: integral to membrane [goid 0016021] [evidence TAS] [pmid 12466851]; go_component: extracellular space [goid 0005615] [evidence TAS] [pmid 12466851]; go_function: cell adhesion molecule activity [goid 0005194] [evidence IEA]; go_process: cell adhesion [goid 0007155] [evidence IEA]; go_process: axon guidance [goid 0007411] [evidence IMP] [pmid 12533613]; go_process: development [goid 0007275] [evidence IEA]; go_process: neurogenesis [goid 0007399] [evidence IEA] |
Mus musculus L1 cell adhesion molecule (L1cam), mRNA. |
CD171;L1 |
S |
| GI_12963686-S |
Ssna1 |
NM_023464.1 |
GI_12963686 |
526 |
GCCCAGAGGGGCAATTTCTGACCTCCACCTGCCTAGACAAGAAAAGCCCT |
NM_023464.1 |
|
|
|
go_component: nucleus [goid 0005634] [evidence IEA]; go_function: identical protein binding [goid 0042802] [evidence IPI] |
Mus musculus Sjogren's syndrome nuclear autoantigen 1 (Ssna1), mRNA. |
1110003H09Rik;1190004J23Rik;AA934184;N14;NA14 |
S |
| GI_12963764-I |
Sars2 |
NM_023637.1 |
GI_12963764 |
1278 |
ACCAGTGCCTCCAACTGCACAGACTTCCAGAGCCGCCGCCTGTACATCAT |
NM_023637.1 |
|
|
|
go_component: mitochondrion [goid 0005739] [evidence IEA]; go_function: ligase activity [goid 0016874] [evidence IEA]; go_function: nucleotide binding [goid 0000166] [evidence IEA]; go_function: tRNA ligase activity [goid 0004812] [evidence IEA]; go_process: protein biosynthesis [goid 0006412] [evidence IEA] |
Mus musculus seryl-aminoacyl-tRNA synthetase 2 (Sars2), mRNA. |
2410015F05Rik;D7Ertd353e;SerRSmt |
I |
| GI_13385605-S |
Tmco5 |
NM_026104.1 |
GI_13385605 |
883 |
CGCGCTGCCTAAGATACTGAGCAGGGACGTCTTGTGGAAGCTGAGATGTT |
NM_026104.1 |
|
|
|
|
Mus musculus transmembrane and coiled-coil domains 5 (Tmco5), mRNA. |
1700095F04Rik |
S |
| GI_13385611-S |
Hdhd1a |
NM_026108.1 |
GI_13385611 |
641 |
ACACGAAAAGCCACCCTGGTGCTGAGTTCCCTCCACGACTTCAAGCCTGA |
NM_026108.1 |
|
|
|
go_function: hydrolase activity [goid 0016787] [evidence ISS] [pmid 12466851]; go_process: metabolism [goid 0008152] [evidence ISS] [pmid 12466851] |
Mus musculus haloacid dehalogenase-like hydrolase domain (Hdhd1a), mRNA. |
1700121L12Rik;GS1 |
S |
| GI_13399317-S |
0610007P06Rik |
NM_026304.1 |
GI_13399317 |
571 |
GCAGTGCTGCCGTGTCCTCCGTTGACTCCTTTACGCAGTTCACACAGAAG |
NM_026304.1 |
|
|
|
|
Mus musculus RIKEN cDNA 0610007P06 gene (0610007P06Rik), mRNA. |
1110002N09Rik;l7Rn6 |
S |
| GI_14211543-S |
Sval2 |
NM_032542.1 |
GI_14211543 |
229 |
ATCAAGTACCTTTCTGCTCACGCCATTTACACTTCCTGCCTTTGCAGTGC |
NM_032542.1 |
|
|
|
|
Mus musculus seminal vesicle antigen-like 2 (Sval2), mRNA. |
SLP-M |
S |
| GI_16716526-S |
V1ra5 |
NM_053220.1 |
GI_16716526 |
621 |
AGTGGCCCTTTTATGCATGCACAGGAAACAGACCCAGCATCTTCAGGAAA |
NM_053220.1 |
|
|
|
go_component: integral to membrane [goid 0016021] [evidence TAS] [pmid 12466851]; go_function: receptor activity [goid 0004872] [evidence ISS] [pmid 11116090]; go_function: pheromone receptor activity [goid 0016503] [evidence ISS] [pmid 12466851]; go_function: rhodopsin-like receptor activity [goid 0001584] [evidence ISS] [pmid 12466851]; go_process: sensory perception of chemical stimulus [goid 0007606] [evidence TAS] [pmid 11116090]; go_process: G-protein coupled receptor protein signaling pathway [goid 0007186] [evidence ISS] [pmid 12466851] |
Mus musculus vomeronasal 1 receptor, A5 (V1ra5), mRNA. |
V1RA2 |
S |
| GI_17505211-S |
Ap3m2 |
NM_029505.1 |
GI_17505211 |
3069 |
GCAGGTCACTTTCACAGGCTCTGGGGGTGGGGATTCCAAGTTTTCTTGGG |
NM_029505.1 |
|
|
|
go_component: Golgi stack [goid 0005795] [evidence IEA]; go_process: protein transport [goid 0015031] [evidence IEA] |
Mus musculus adaptor-related protein complex 3, mu 2 subunit (Ap3m2), mRNA. |
5830445E16Rik;AP-3B |
S |
| GI_18017595-S |
Snx4 |
NM_080557.1 |
GI_18017595 |
2110 |
GGTGTAGCATCTCCATGTGTGAGACACTCGTAGTGAGCACATGTGAGCGG |
NM_080557.1 |
|
|
|
|
Mus musculus sorting nexin 4 (Snx4), mRNA. |
1810036H14Rik;AI037066 |
S |
| GI_19527165-S |
Vrk3 |
NM_133945.1 |
GI_19527165 |
1632 |
TCCCTGTCTCAGCTCTGGCAGCTGTGGATGGAGGTAAGTGGATGCTGGCG |
NM_133945.1 |
|
|
|
go_component: nucleus [goid 0005634] [evidence IDA]; go_function: ATP binding [goid 0005524] [evidence IEA]; go_function: kinase activity [goid 0016301] [evidence IEA]; go_function: nucleotide binding [goid 0000166] [evidence IEA]; go_function: transferase activity [goid 0016740] [evidence IEA] |
Mus musculus vaccinia related kinase 3 (Vrk3), mRNA. |
AI428238 |
S |
| gi_21070949_ref_NM_019639.2__151-S |
Ubc |
XM_147315.1 |
gi_21070949_ref_NM_019639.2__151 |
8 |
CCGCACCCTGTCAGACTACAACATCCAGAAAGAGTCCACCCTGCACCTGG |
XM_147315.1 |
|
|
|
go_component: nucleus [goid 0005634] [evidence IEA] |
Mus musculus ubiquitin C (Ubc), mRNA. |
2700054O04Rik;AI194771;TI-225 |
S |
| gi_21070949_ref_NM_019639.2__531-S |
Ubc |
XM_147315.1 |
gi_21070949_ref_NM_019639.2__531 |
15 |
CCTTCCTCACCACAGTATCTAAAAAGAGCCCTCCTTGTGCTTGTTCTTGG |
XM_147315.1 |
|
|
|
go_component: nucleus [goid 0005634] [evidence IEA] |
Mus musculus ubiquitin C (Ubc), mRNA. |
2700054O04Rik;AI194771;TI-225 |
S |
| GI_21070949-S |
Ubc |
NM_019639.2 |
GI_21070949 |
2596 |
GACAGACGTACCTTCCTCACCACAGTATCTAAAAAGAGCCCTCCTTGTGC |
NM_019639.2 |
|
|
|
|
Mus musculus ubiquitin C (Ubc), mRNA. |
2700054O04Rik;AI194771;TI-225 |
S |
| GI_21311970-S |
Nol9 |
NM_028727.1 |
GI_21311970 |
2134 |
CCGTGTTCCAAAGTGATGAGCGAGATTGTCTATAAAAGGCCCTGCCAAGG |
NM_028727.1 |
|
|
|
go_function: sugar binding [goid 0005529] [evidence IEA]; go_function: hydrolase activity [goid 0016787] [evidence IEA]; go_function: carboxypeptidase activity [goid 0004180] [evidence IEA] |
Mus musculus nucleolar protein 9 (Nol9), mRNA. |
4632412I24Rik;6030462G04Rik;AI449622;AW490720 |
S |
| GI_21312249-S |
Bbs5 |
NM_028284.1 |
GI_21312249 |
1075 |
CACTGCAGGGACTTTGGGATGAGTTAATCTTGAATGAGTTGAGCTGGACC |
NM_028284.1 |
|
|
|
|
Mus musculus Bardet-Biedl syndrome 5 (human) (Bbs5), mRNA. |
1700049I01Rik;2700023J09Rik |
S |
| GI_21312925-I |
Josd3 |
NM_029248.1 |
GI_21312925 |
910 |
CAAGACCCCAGCCTCGCCCTTTTGCTCATCTGCAGAGCAAGGTCATGAAG |
NM_029248.1 |
|
|
|
|
Mus musculus Josephin domain containing 3 (Josd3), transcript variant 2, mRNA. |
2810003M17Rik;4930553M18Rik;5930426I11Rik;MGC117821 |
I |
| GI_21313189-S |
1700018B08Rik |
NM_029597.1 |
GI_21313189 |
917 |
AGGAGGATCTGCGACACTTGCTGCTTCCACAGGAGATAAGATCTGCACCC |
NM_029597.1 |
|
|
|
|
Mus musculus RIKEN cDNA 1700018B08 gene (1700018B08Rik), mRNA. |
1700084O22Rik |
S |
Total number of rows: 24611
Table truncated, full table size 10305 Kbytes.
| Supplementary data files not provided |
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