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Sample GSM530927 Query DataSets for GSM530927
Status Public on Apr 08, 2010
Title Mut.z.1
Sample type RNA
 
Source name Mut, z
Organism Mus musculus
Characteristics genotype: Q111 (Mut)
agent: ZDON
Treatment protocol Cells were treated with ZDON, Boc-DON, CystamineA, and Control
Extracted molecule total RNA
Extraction protocol Q7 and Q111 have been treated with ZDON (50µM) or Boc-DON (50µM) or cystamine (250µM) for 12 hours. Cells were washed with cold PBS and RNA has been extracted with the RNAgents Total RNA Isolation System Kit (Promega), as directed by the manufacturer. Briefly, cells were lysed in chilled Denaturating Solution and the RNA was precipitated and isolated through Phenol:Chloroform:Isoamyl Alchool extraction.
Label Biotin
Label protocol Illumina protocol
 
Hybridization protocol Illumina protocol
Scan protocol Illumina protocol
Description Q111 striatal cell line treated with ZDON
4068264040_G
Data processing BeadStudio, quantile normalization
 
Submission date Apr 07, 2010
Last update date Apr 07, 2010
Contact name Giovanni Coppola
E-mail(s) [email protected]
Phone 310-794-4172
Organization name UCLA
Department Psychiatry and Neurology
Lab Neurogenetics
Street address 1524 Gonda, 695 Charles Young Drive South
City Los Angeles
State/province CA
ZIP/Postal code 90095
Country USA
 
Platform ID GPL7868
Series (1)
GSE21237 Inhibition of transglutaminase 2 mitigates transcriptional dysregulation in models of Huntington disease

Data table header descriptions
ID_REF
VALUE Log2 transformed, quantile normalized expresssion levels

Data table
ID_REF VALUE
18S_rRNA_X00686_523-S 14.3631383
GI_10304988-S 6.76826638
GI_11079652-S 6.442052779
GI_12963686-S 12.51419895
GI_12963764-I 7.593334265
GI_13385605-S 6.904960181
GI_13385611-S 6.730960092
GI_13399317-S 11.55596374
GI_14211543-S 6.69624911
GI_16716526-S 7.003291422
GI_17505211-S 7.343632345
GI_18017595-S 11.8513237
GI_19527165-S 10.16354051
gi_21070949_ref_NM_019639.2__151-S 14.6730569
gi_21070949_ref_NM_019639.2__531-S 13.97653188
GI_21070949-S 14.57366545
GI_21311970-S 8.069927728
GI_21312249-S 9.959168796
GI_21312925-I 9.188793885
GI_21313189-S 6.559139411

Total number of rows: 24611

Table truncated, full table size 723 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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