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Status
Public on Apr 01, 2009
Title
UCMerced_Mfav_v3
Technology type
spotted DNA/cDNA
Distribution
non-commercial
Organism
Orbicella faveolata Manufacturer
UC Merced
Manufacture protocol
Microarrays consist of PCR-amplified cDNAs from M. faveolata. 1,314 PCR-amplified cDNAs were spotted in duplicate on poly-lysine-coated slides yielding a microarray with 2,628 total features. cDNAs were chosen from EST libraries described in (Schwarz et al., 2008). To annotate the cDNAs, we performed a BLASTx analysis (E-value cut-off 1e-5) against the GenBank non-redundant DNA and protein database (nr).
Support
glass
Coating
polysine
Web link
http://sequoia.ucmerced.edu/MedinaLab/index.php Contributor(s)
Voolstra CR , Schwarz JA , Schnetzer J , Sunagawa S , DeSalvo MK , Coffroth M , Szmant AM , Medina M Citation(s)
18298846 Submission date
Feb 20, 2009
Last update date
Apr 01, 2009
Contact name
Christian Robert Voolstra
E-mail(s)
[email protected] URL
http://faculty.kaust.edu.sa/sites/christianvoolstra/Pages/home.aspx Organization name
King Abdullah University of Science and Technology
Street address
Red Sea Research Center
City
Thuwal
ZIP/Postal code
23955
Country
Saudi Arabia
Samples (18)
GSM372700 , GSM372742 , GSM372743 , GSM372744 , GSM372799 , GSM372819
GSM372820 ,
GSM372821 ,
GSM372822 ,
GSM372823 ,
GSM372824 ,
GSM372825 ,
GSM372826 ,
GSM372827 ,
GSM372828 ,
GSM372829 ,
GSM372830 ,
GSM372831 Series (1)
GSE14923 The host transcriptome remains unaltered during the establishment of coral-algal symbioses
Data table header descriptions ID Name annotation based on BLASTx
CLONE_ID Clone ID
Data table ID Name CLONE_ID AOKF2089
-
AOKF2089 AOKF388
-
AOKF388 AOKF514
-
AOKF514 AOSB1002
atp-dependent rna protein id:
AOSB1002 AOSB1012
serine arginine repetitive matrix 1
AOSB1012 AOSB1020
saps3 protein
AOSB1020 AOSB1028
ubiquitin-conjugating enzyme e2s
AOSB1028 AOSB1050
mitochondrial transcription factor b1 cg7319-isoform c
AOSB1050 AOSB1061
zinc finger protein 403
AOSB1061 AOSB1072
-
AOSB1072 AOSB1073
smooth muscle
AOSB1073 AOSB1074
cis-golgi matrix protein gm130
AOSB1074 AOSB1075
adaptor protein complex ap-alpha 2 subunit
AOSB1075 AOSB1088
microtubule-actin crosslinking factor 1
AOSB1088 AOSB1100
prp3 pre-mrna processing factor 3 homolog
AOSB1100 AOSB1111
adenosinerna-specific isoform b
AOSB1111 AOSB1115
truncated clumping factor
AOSB1115 AOSB1116
large homolog 7
AOSB1116 AOSB1124
hypothetical protein CHGG_05731
AOSB1124 AOSB1137
"PREDICTED: hypothetical protein, partial "
AOSB1137
1275 35 Kbytes .Supplementary file Size Download File type/resource GPL8215_Mfav_full_array_layout_UID.txt.gz
19.2 Kb
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