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Status
Public on Jun 17, 2010
Title
Agilent SurePrint G3 CGH array (4X180K) CCA_VUMC design AMADID#022522
Technology type
in situ oligonucleotide
Distribution
commercial
Organism
Homo sapiens Manufacturer
Agilent Technologies
Manufacture protocol
see manufacturer's web site at http://www.agilent.com/
Description
170k BaBo UMCG plus Cancer Census.
Web link
http://www.vumc.com/afdelingen/microarrays Contributor(s)
Ylstra B , Eijk P Submission date
Jun 09, 2009
Last update date
Jan 17, 2013
Contact name
Daoud Sie
E-mail(s)
[email protected] Phone
+31 20 4442428
Organization name
Vrije Universiteit Medical Center
Department
Pathology
Lab
Microarray Core Facility
Street address
De Boelelaan 1117
City
Amsterdam
ZIP/Postal code
1081 HV
Country
Netherlands
Samples (846)
GSM442200 , GSM745814 , GSM745815 , GSM745816 , GSM745817 , GSM745818
GSM745819 ,
GSM745820 ,
GSM745821 ,
GSM745822 ,
GSM745823 ,
GSM745824 ,
GSM756008 ,
GSM756009 ,
GSM756010 ,
GSM756011 ,
GSM756012 ,
GSM756013 ,
GSM756014 ,
GSM756015 ,
GSM756016 ,
GSM756017 ,
GSM756018 ,
GSM756019 ,
GSM756020 ,
GSM756021 ,
GSM756022 ,
GSM756023 ,
GSM756024 ,
GSM756025 ,
GSM756026 ,
GSM756027 ,
GSM756028 ,
GSM756029 ,
GSM756030 ,
GSM756031 ,
GSM756032 ,
GSM756033 ,
GSM756034 ,
GSM756035 ,
GSM756036 ,
GSM756037 ,
GSM756038 ,
GSM756039 ,
GSM756040 ,
GSM756041 ,
GSM756042 ,
GSM756043 ,
GSM756044 ,
GSM756045 ,
GSM756046 ,
GSM756047 ,
GSM756048 ,
GSM756049 ,
GSM756050 ,
GSM756051 ,
GSM756052 ,
GSM756053 ,
GSM756054 ,
GSM756055 ,
GSM756056 ,
GSM756057 ,
GSM756058 ,
GSM756059 ,
GSM756060 ,
GSM756061 ,
GSM756062 ,
GSM756063 ,
GSM756064 ,
GSM756065 ,
GSM756066 ,
GSM756067 ,
GSM756068 ,
GSM756069 ,
GSM756070 ,
GSM756071 ,
GSM756072 ,
GSM756073 ,
GSM756074 ,
GSM756075 ,
GSM756076 ,
GSM756077 ,
GSM756078 ,
GSM756079 ,
GSM756080 ,
GSM756081 ,
GSM756082 ,
GSM756083 ,
GSM756084 ,
GSM756085 ,
GSM756086 ,
GSM756087 ,
GSM756088 ,
GSM756089 ,
GSM756090 ,
GSM756091 ,
GSM756092 ,
GSM756093 ,
GSM756094 ,
GSM756095 ,
GSM756096 ,
GSM756097 ,
GSM756098 ,
GSM756099 ,
GSM756100 ,
GSM756101 ,
GSM756102 ,
GSM756103 ,
GSM756104 ,
GSM756105 ,
GSM756106 ,
GSM756107 ,
GSM756108 ,
GSM756109 ,
GSM756110 ,
GSM756111 ,
GSM756112 ,
GSM756113 ,
GSM756114 ,
GSM756115 ,
GSM756116 ,
GSM756117 ,
GSM756118 ,
GSM756119 ,
GSM756120 ,
GSM756121 ,
GSM756122 ,
GSM756123 ,
GSM756124 ,
GSM756125 ,
GSM903063 ,
GSM903064 ,
GSM903065 ,
GSM903066 ,
GSM903067 ,
GSM903068 ,
GSM903069 ,
GSM903307 ,
GSM903308 ,
GSM903309 ,
GSM903310 ,
GSM903311 ,
GSM903312 ,
GSM903313 ,
GSM903314 ,
GSM903315 ,
GSM903316 ,
GSM903317 ,
GSM903318 ,
GSM903319 ,
GSM903320 ,
GSM903321 ,
GSM903322 ,
GSM903323 ,
GSM903324 ,
GSM903325 ,
GSM903326 ,
GSM903327 ,
GSM903328 ,
GSM903329 ,
GSM903330 ,
GSM903331 ,
GSM903332 ,
GSM903333 ,
GSM903334 ,
GSM903335 ,
GSM903336 ,
GSM903337 ,
GSM903338 ,
GSM903339 ,
GSM903340 ,
GSM903341 ,
GSM903342 ,
GSM903343 ,
GSM903344 ,
GSM903345 ,
GSM903346 ,
GSM903347 ,
GSM903348 ,
GSM903349 ,
GSM903350 ,
GSM903351 ,
GSM903352 ,
GSM903353 ,
GSM903354 ,
GSM903355 ,
GSM903356 ,
GSM903357 ,
GSM903358 ,
GSM903359 ,
GSM903360 ,
GSM903361 ,
GSM903362 ,
GSM903363 ,
GSM903364 ,
GSM903365 ,
GSM903366 ,
GSM903367 ,
GSM903368 ,
GSM903369 ,
GSM903370 ,
GSM903371 ,
GSM903372 ,
GSM903373 ,
GSM903374 ,
GSM903375 ,
GSM903376 ,
GSM903377 ,
GSM903378 ,
GSM903379 ,
GSM903380 ,
GSM903381 ,
GSM903382 ,
GSM903383 ,
GSM903384 ,
GSM903385 ,
GSM903386 ,
GSM903387 ,
GSM903388 ,
GSM903389 ,
GSM903390 ,
GSM903391 ,
GSM903392 ,
GSM903393 ,
GSM903394 ,
GSM903395 ,
GSM903396 ,
GSM903397 ,
GSM903398 ,
GSM903399 ,
GSM903400 ,
GSM903401 ,
GSM903402 ,
GSM903403 ,
GSM903404 ,
GSM903405 ,
GSM903406 ,
GSM903407 ,
GSM903408 ,
GSM903409 ,
GSM903410 ,
GSM903411 ,
GSM903412 ,
GSM903413 ,
GSM903414 ,
GSM903415 ,
GSM903416 ,
GSM903417 ,
GSM903418 ,
GSM903419 ,
GSM903420 ,
GSM903421 ,
GSM903422 ,
GSM903423 ,
GSM903424 ,
GSM903425 ,
GSM903426 ,
GSM903427 ,
GSM903428 ,
GSM903429 ,
GSM903430 ,
GSM903431 ,
GSM903432 ,
GSM903433 ,
GSM903434 ,
GSM903435 ,
GSM903436 ,
GSM903437 ,
GSM903438 ,
GSM903439 ,
GSM903440 ,
GSM903441 ,
GSM903442 ,
GSM903443 ,
GSM903444 ,
GSM903445 ,
GSM903446 ,
GSM903447 ,
GSM903448 ,
GSM903449 ,
GSM903450 ,
GSM903451 ,
GSM903452 ,
GSM903453 ,
GSM903454 ,
GSM903455 ,
GSM903456 ,
GSM903457 ,
GSM903458 ,
GSM903459 ,
GSM903460 ,
GSM903461 ,
GSM903462 ,
GSM903463 ,
GSM903464 ,
GSM903465 ,
GSM903466 ,
GSM903467 ,
GSM903468 ,
GSM903469 ,
GSM903470 ,
GSM903471 ,
GSM903472 ,
GSM903473 ,
GSM903474 ,
GSM903475 ,
GSM903476 ,
GSM903477 ,
GSM903478 ,
GSM903479 ,
GSM903480 ,
GSM903481 ,
GSM903482 ,
GSM903483 ,
GSM903484 ,
GSM903485 ,
GSM903486 ,
GSM903487 ,
GSM903488 ,
GSM903489 ,
GSM903490 ,
GSM903491 ,
GSM903492 ,
GSM903493 ,
GSM903494 ,
GSM903495 ,
GSM903496 ,
GSM903497 ,
GSM903498 ,
GSM903499 ,
GSM903500 ,
GSM903501 ,
GSM903502 ,
GSM903503 ,
GSM903504 ,
GSM903505 ,
GSM903506 ,
GSM903507 ,
GSM903508 ,
GSM903509 ,
GSM903510 ,
GSM903511 ,
GSM903512 ,
GSM903513 ,
GSM903514 ,
GSM903515 ,
GSM903516 ,
GSM903517 ,
GSM903518 ,
GSM903519 ,
GSM903520 ,
GSM903521 ,
GSM903522 ,
GSM903523 ,
GSM903524 ,
GSM903525 ,
GSM903526 ,
GSM903527 ,
GSM903528 ,
GSM903529 ,
GSM903530 ,
GSM903531 ,
GSM903532 ,
GSM903533 ,
GSM903534 ,
GSM903535 ,
GSM903536 ,
GSM903537 ,
GSM903538 ,
GSM903539 ,
GSM903540 ,
GSM903541 ,
GSM903542 ,
GSM903543 ,
GSM903544 ,
GSM903545 ,
GSM903546 ,
GSM903547 ,
GSM903548 ,
GSM903549 ,
GSM903550 ,
GSM903551 ,
GSM903552 ,
GSM903553 ,
GSM903554 ,
GSM903555 ,
GSM903556 ,
GSM903557 ,
GSM903558 ,
GSM903559 ,
GSM903560 ,
GSM903561 ,
GSM903562 ,
GSM903563 ,
GSM903564 ,
GSM903565 ,
GSM903566 ,
GSM903567 ,
GSM903568 ,
GSM903569 ,
GSM903570 ,
GSM903571 ,
GSM903572 ,
GSM903573 ,
GSM903574 ,
GSM903575 ,
GSM903576 ,
GSM903577 ,
GSM903578 ,
GSM903579 ,
GSM903580 ,
GSM903581 ,
GSM903582 ,
GSM903583 ,
GSM903584 ,
GSM903585 ,
GSM903586 ,
GSM903587 ,
GSM903588 ,
GSM903589 ,
GSM903590 ,
GSM903591 ,
GSM903592 ,
GSM903593 ,
GSM903594 ,
GSM903595 ,
GSM903596 ,
GSM903597 ,
GSM903598 ,
GSM903599 ,
GSM903600 ,
GSM903601 ,
GSM903602 ,
GSM903603 ,
GSM903604 ,
GSM903605 ,
GSM903606 ,
GSM903607 ,
GSM903608 ,
GSM903609 ,
GSM903610 ,
GSM903611 ,
GSM903612 ,
GSM903613 ,
GSM903614 ,
GSM903615 ,
GSM903616 ,
GSM903617 ,
GSM903618 ,
GSM903619 ,
GSM903620 ,
GSM903621 ,
GSM903622 ,
GSM903623 ,
GSM903624 ,
GSM903625 ,
GSM903626 ,
GSM903627 ,
GSM903628 ,
GSM903629 ,
GSM903630 ,
GSM903631 ,
GSM903632 ,
GSM903633 ,
GSM903634 ,
GSM903635 ,
GSM903636 ,
GSM903637 ,
GSM903638 ,
GSM903639 ,
GSM903640 ,
GSM903641 ,
GSM903642 ,
GSM903643 ,
GSM903644 ,
GSM903645 ,
GSM903646 ,
GSM903647 ,
GSM903648 ,
GSM903649 ,
GSM903650 ,
GSM903651 ,
GSM903652 ,
GSM903653 ,
GSM903654 ,
GSM903655 ,
GSM908110 ,
GSM908111 ,
GSM908112 ,
GSM908113 ,
GSM908114 ,
GSM908115 ,
GSM943063 ,
GSM943064 ,
GSM943065 ,
GSM943066 ,
GSM943067 ,
GSM943068 ,
GSM943069 ,
GSM943070 ...
Accession list truncated, click here to browse through all related public accessions You can also download a list of all accessions here Series (20)
GSE17715 Phenotypic and genomic analysis of an exceptional case of enteropathy associated T cell lymphoma
GSE30121 Three commercial array platforms compared for DNA copy number detection with DNA isolated from FFPE tissue [Agilent]
GSE30123 Three commercial array platforms compared for DNA copy number detection with DNA isolated from FFPE tissue
GSE30479 DNA copy number changes in colorectal flat adenomas
GSE36856 Ten percent of aberrant cells is sufficient for detection of DNA copy number alterations (part 1)
GSE36864 Genomic landscape of metastatic colorectal cancer
GSE36989 Ten percent of aberrant cells is sufficient for detection of DNA copy number alterations (part 3)
GSE36993 Ten percent of aberrant cells is sufficient for detection of DNA copy number alterations
GSE38479 Chromosomal copy number aberrations in colorectal metastases resemble their primary counterparts and differences are typically non-recurrent.
GSE40777 High risk HPV-positive lung carcinomas: molecular evidence for a pattern of pulmonary metastasis
GSE41253 Copy number analysis of familial and sporadic Epithelial Ovarian Carcinomas (EOC) from FFPE tissue on high resolution Agilent platform.
GSE42377 Benefit of a second opinion, intrapulmonary metastases or multiple primary tumors?
GSE47148 Chromosome 20 Aberrations at the Diploid-Aneuploid Transition in Sporadic Colorectal Cancer
GSE56106 Reduced genetic tumor heterogeneity after neoadjuvant chemotherapy is related to favorable outcome in patients with esophageal adenocarcinoma
GSE63216 Recurrent breakpoint genes in colorectal cancer
GSE74633 Bortezomib resistance in CCRF-CEM cell line [CGH]
GSE74635 Bortezomib resistance in CCRF-CEM cell line
GSE81752 Chronic p53-independent p21 expression deregulates replication licensing, leading to genomic instability I
GSE81754 Chronic p53-independent p21 expression deregulates replication licensing, leading to genomic instability
GSE87353 High number of chromosomal copy number aberrations inversely relates to t(11;19)(q21;p13) translocation status in Mucoepidermoid Carcinoma of the Salivary Glands
Data table header descriptions ID COL Column
ROW Row
SPOT ID Spot identifier
CONTROL_TYPE Control type
GB_ACC GenBankAccession
GENE_SYMBOL Gene Symbol
GENE_NAME Gene Name
ACCESSION_STRING Accession String
CHROMOSOMAL_LOCATION Chromosomal Location
GB_RANGE hg18 build
CYTOBAND Cytoband
DESCRIPTION Description
SPOT_ID spot identifier
Data table ID COL ROW SPOT ID CONTROL_TYPE GB_ACC GENE_SYMBOL GENE_NAME ACCESSION_STRING CHROMOSOMAL_LOCATION GB_RANGE CYTOBAND DESCRIPTION SPOT_ID 1
532
340
HsCGHBrightCorner
pos
CONTROL: HsCGHBrightCorner
2
532
338
DarkCorner2
pos
CONTROL: DarkCorner2
3
532
336
DarkCorner2
pos
CONTROL: DarkCorner2
4
532
334
DarkCorner2
pos
CONTROL: DarkCorner2
5
532
332
DarkCorner2
pos
CONTROL: DarkCorner2
6
532
330
DarkCorner2
pos
CONTROL: DarkCorner2
7
532
328
DarkCorner2
pos
CONTROL: DarkCorner2
8
532
326
DarkCorner2
pos
CONTROL: DarkCorner2
9
532
324
DarkCorner2
pos
CONTROL: DarkCorner2
10
532
322
DarkCorner2
pos
CONTROL: DarkCorner2
11
532
320
DarkCorner2
pos
CONTROL: DarkCorner2
12
532
318
DarkCorner2
pos
CONTROL: DarkCorner2
13
532
316
DarkCorner2
pos
CONTROL: DarkCorner2
14
532
314
DarkCorner2
pos
CONTROL: DarkCorner2
15
532
312
DarkCorner2
pos
CONTROL: DarkCorner2
16
532
310
DarkCorner2
pos
CONTROL: DarkCorner2
17
532
308
DarkCorner2
pos
CONTROL: DarkCorner2
18
532
306
DarkCorner2
pos
CONTROL: DarkCorner2
19
532
304
DarkCorner2
pos
CONTROL: DarkCorner2
20
532
302
DarkCorner2
pos
CONTROL: DarkCorner2
180880 31144 Kbytes .Supplementary data files not provided
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