GEO help: Mouse over screen elements for information.
Status
Public on Jun 16, 2005
Title
NIA Mouse 22K Microarray v1.0 (Development 60-mer Oligo)
Technology type
in situ oligonucleotide
Distribution
custom-commercial
Organism
Mus musculus Manufacturer
Agilent
Manufacture protocol
As descripted by Agilent manuals under Platform_web_link
Support
glass
Coating
aminosilane
Description
NIA Mouse 22K Microarray v1.0 contains 21,939 60-mer oligonucleotides representing sequences derived from the NIA/NIH early mouse embryo cDNA clone set. The annotation information is based on the NIA Mouse Gene Index 4.0 http://lgsun.grc.nia.nih.gov/geneindex4, which combines genome assembly sequences from public databases (RefSeq, Ensembl, Riken), and the NIA collection of public EST libraries derived from stem cells and early stage of mouse embryos, along with human-curated genetic databases to form structure models of over 40,000 genetic loci4.
Web link
http://www.chem.agilent.com/scripts/generic.asp?lpage=11617&indcol=N&prodcol=Y Submission date
Dec 30, 2003
Last update date
Jan 17, 2013
Contact name
Minoru S.H. Ko
E-mail(s)
[email protected] Phone
410-558-8359
Organization name
NIH
Department
National Institute on Aging
Lab
Lab of Genetics
Street address
251 Bayview Blvd, Suite 100, 10C
City
Baltimore
State/province
MD
ZIP/Postal code
21224
Country
USA
Samples (160)
GSM14658 , GSM14660 , GSM14661 , GSM14662 , GSM14663 , GSM14664
GSM14665 ,
GSM14666 ,
GSM14667 ,
GSM14668 ,
GSM14677 ,
GSM14678 ,
GSM14679 ,
GSM14680 ,
GSM14681 ,
GSM14682 ,
GSM14683 ,
GSM14684 ,
GSM14685 ,
GSM14686 ,
GSM14687 ,
GSM14688 ,
GSM14689 ,
GSM14690 ,
GSM14691 ,
GSM14692 ,
GSM14693 ,
GSM14694 ,
GSM14695 ,
GSM14696 ,
GSM14697 ,
GSM14698 ,
GSM14699 ,
GSM14700 ,
GSM14701 ,
GSM14702 ,
GSM14703 ,
GSM14704 ,
GSM14705 ,
GSM14706 ,
GSM14707 ,
GSM14708 ,
GSM14709 ,
GSM14710 ,
GSM14711 ,
GSM14712 ,
GSM14713 ,
GSM14714 ,
GSM14715 ,
GSM14716 ,
GSM14717 ,
GSM14718 ,
GSM14719 ,
GSM14720 ,
GSM14721 ,
GSM14722 ,
GSM14723 ,
GSM14724 ,
GSM14725 ,
GSM14726 ,
GSM14727 ,
GSM14728 ,
GSM14729 ,
GSM14730 ,
GSM27753 ,
GSM27754 ,
GSM27755 ,
GSM27756 ,
GSM27757 ,
GSM27758 ,
GSM27933 ,
GSM27934 ,
GSM27935 ,
GSM27936 ,
GSM27937 ,
GSM27938 ,
GSM27939 ,
GSM27940 ,
GSM27941 ,
GSM27942 ,
GSM27943 ,
GSM27944 ,
GSM72258 ,
GSM72259 ,
GSM72260 ,
GSM72261 ,
GSM72262 ,
GSM72263 ,
GSM80037 ,
GSM80038 ,
GSM80039 ,
GSM80040 ,
GSM80041 ,
GSM80042 ,
GSM80043 ,
GSM80044 ,
GSM80182 ,
GSM80183 ,
GSM80184 ,
GSM80185 ,
GSM137761 ,
GSM137762 ,
GSM137763 ,
GSM137764 ,
GSM137765 ,
GSM137766 ,
GSM137767 ,
GSM137768 ,
GSM137769 ,
GSM137770 ,
GSM137771 ,
GSM137772 ,
GSM137773 ,
GSM137774 ,
GSM137775 ,
GSM137776 ,
GSM137777 ,
GSM137778 ,
GSM137779 ,
GSM137780 ,
GSM137781 ,
GSM137782 ,
GSM137783 ,
GSM137784 ,
GSM137785 ,
GSM137786 ,
GSM137787 ,
GSM137788 ,
GSM137789 ,
GSM137790 ,
GSM137791 ,
GSM137792 ,
GSM137793 ,
GSM137794 ,
GSM137795 ,
GSM137796 ,
GSM137797 ,
GSM137798 ,
GSM137799 ,
GSM137800 ,
GSM137801 ,
GSM137802 ,
GSM137803 ,
GSM137804 ,
GSM137805 ,
GSM137806 ,
GSM137807 ,
GSM137808 ,
GSM137809 ,
GSM137810 ,
GSM137811 ,
GSM137812 ,
GSM137813 ,
GSM137814 ,
GSM137815 ,
GSM137816 ,
GSM137817 ,
GSM137818 ,
GSM137819 ,
GSM137820 Series (8)
GSE936 Dynamics of global gene expression changes during mouse preimplantation development
GSE1634 Global gene expression analysis identifies molecular pathways distinguishing blastocyst dormancy and activation
GSE1646 Age-associated alteration of gene expression patterns in mouse oocytes
GSE3214 High-throughput screen for genes predominantly expressed in the ICM of mouse blastocysts by whole mount in situ hybridiz
GSE3507 In situ-synthesized novel microarray optimized for mouse stem cell and early developmental expression profiling: Part 3
GSE3513 In situ-synthesized novel microarray optimized for mouse stem cell and early developmental expression profiling: Part2
GSE3516 In situ-synthesized novel microarray optimized for mouse stem cell and early developmental expression profiling: Part1
GSE5936 Dissecting Oct3/4-regulated gene networks in embryonic stem cells by expression
Data table header descriptions ID Feature Number
Row Feature location row
Col Feature location column
Start Start position of the probe sequence
ProbeUID Unique integer for each unique probe in a design
ControlType Feature control type 0=Control type none 1=Positive control -1=Negative control -1000=Deletion control -2000=Not probe
ProbeName An Agilent-assigned identifier for the probe synthesized on the microarray
GeneName This is an identifier for the gene for which the probe provides expression information. The target sequence identified by the systematic name is normally a representative or consensus sequence for the gene
OLIGO_NAME NIA Universal Oligo Name
GB_LIST GenBank accession list,
CLONE_ID Clone identifier
SPOT_ID Alternative identifier
SP LIST SwissProt accession list
SEQUENCE Sequence of oligonucleotide probe
GENE Entrez GENE ID
GENE_SYMBOL Gene symbols Associated with the Oligo, Based on NIA Gene Index 4
GENE_DESCRIPTION Gene Description Based on NIA Gene Index 4
Data table ID Row Col Start ProbeUID ControlType ProbeName GeneName OLIGO_NAME GB_LIST CLONE_ID SPOT_ID SP LIST SEQUENCE GENE GENE_SYMBOL GENE_DESCRIPTION 1
1
1
0
0
1
CTRL:(+)Pro25G_onG3PDH570_1(60)
Pro25G_onG3PDH570_1(60)
Postive Control
ATCATCGTAGCTGGTCAGTGTATCCGTGTGAACCATGAGAAGTATGACAATTTTTTTTTT
2
1
2
0
1
1
CTRL:(+)Pro25G
Pro25G
Postive Control
ATCATCGTAGCTGGTCAGTGTATCC
3
1
3
0
2
-1
CTRL:(-)GD13
GD13
Negative Control
GCTAGCTAGCGCTAGCGAAAGCTAGCGCTAGCTAGCTTTTTTTT
4
1
4
0
3
-1
CTRL:(-)3xSLv1
3xSLv1
Negative Control
GGTCACTGAAAGCAGTGACCTTTTGCTAGCAAAGGCTAGCTTTTCGATCGAAAGCGATCG
5
1
5
0
0
1
CTRL:(+)Pro25G_onG3PDH570_1(60)
Pro25G_onG3PDH570_1(60)
Postive Control
ATCATCGTAGCTGGTCAGTGTATCCGTGTGAACCATGAGAAGTATGACAATTTTTTTTTT
6
1
6
0
1
1
CTRL:(+)Pro25G
Pro25G
Postive Control
ATCATCGTAGCTGGTCAGTGTATCC
7
1
7
0
2
-1
CTRL:(-)GD13
GD13
Negative Control
GCTAGCTAGCGCTAGCGAAAGCTAGCGCTAGCTAGCTTTTTTTT
8
1
8
0
3
-1
CTRL:(-)3xSLv1
3xSLv1
Negative Control
GGTCACTGAAAGCAGTGACCTTTTGCTAGCAAAGGCTAGCTTTTCGATCGAAAGCGATCG
9
1
9
0
0
1
CTRL:(+)Pro25G_onG3PDH570_1(60)
Pro25G_onG3PDH570_1(60)
Postive Control
ATCATCGTAGCTGGTCAGTGTATCCGTGTGAACCATGAGAAGTATGACAATTTTTTTTTT
10
1
10
0
1
1
CTRL:(+)Pro25G
Pro25G
Postive Control
ATCATCGTAGCTGGTCAGTGTATCC
11
1
11
0
2
-1
CTRL:(-)GD13
GD13
Negative Control
GCTAGCTAGCGCTAGCGAAAGCTAGCGCTAGCTAGCTTTTTTTT
12
1
12
0
3
-1
CTRL:(-)3xSLv1
3xSLv1
Negative Control
GGTCACTGAAAGCAGTGACCTTTTGCTAGCAAAGGCTAGCTTTTCGATCGAAAGCGATCG
13
1
13
0
0
1
CTRL:(+)Pro25G_onG3PDH570_1(60)
Pro25G_onG3PDH570_1(60)
Postive Control
ATCATCGTAGCTGGTCAGTGTATCCGTGTGAACCATGAGAAGTATGACAATTTTTTTTTT
14
1
14
0
1
1
CTRL:(+)Pro25G
Pro25G
Postive Control
ATCATCGTAGCTGGTCAGTGTATCC
15
1
15
0
2
-1
CTRL:(-)GD13
GD13
Negative Control
GCTAGCTAGCGCTAGCGAAAGCTAGCGCTAGCTAGCTTTTTTTT
16
1
16
0
3
-1
CTRL:(-)3xSLv1
3xSLv1
Negative Control
GGTCACTGAAAGCAGTGACCTTTTGCTAGCAAAGGCTAGCTTTTCGATCGAAAGCGATCG
17
1
17
0
0
1
CTRL:(+)Pro25G_onG3PDH570_1(60)
Pro25G_onG3PDH570_1(60)
Postive Control
ATCATCGTAGCTGGTCAGTGTATCCGTGTGAACCATGAGAAGTATGACAATTTTTTTTTT
18
1
18
0
1
1
CTRL:(+)Pro25G
Pro25G
Postive Control
ATCATCGTAGCTGGTCAGTGTATCC
19
1
19
0
2
-1
CTRL:(-)GD13
GD13
Negative Control
GCTAGCTAGCGCTAGCGAAAGCTAGCGCTAGCTAGCTTTTTTTT
20
1
20
0
3
-1
CTRL:(-)3xSLv1
3xSLv1
Negative Control
GGTCACTGAAAGCAGTGACCTTTTGCTAGCAAAGGCTAGCTTTTCGATCGAAAGCGATCG
22575 4701 Kbytes .Supplementary data files not provided
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