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Platform GPL8876 Query DataSets for GPL8876
Status Public on Jul 18, 2009
Title Agilent custom 105K array (Agilent-019507)
Technology type spotted oligonucleotide
Distribution custom-commercial
Organism Homo sapiens
Manufacturer Agilent Technologies
Manufacture protocol see manufacturer's web site at http://www.agilent.com/
 
Description as per GPL4093 with additional oligonucleotides spanning pseudoautosomal region 1 on Xp/Yp
 
Submission date Jul 17, 2009
Last update date Jan 17, 2013
Contact name Vikki Rand
E-mail(s) [email protected]
Organization name Newcastle University
Department Northern Institute for Cancer Research
Lab Lymphoma Genomics
Street address Paul O'Gorman Building, Newcastle University
City Newcastle Upon Tyne
State/province Tyne and Wear
ZIP/Postal code NE12 4HH
Country United Kingdom
 
Samples (6) GSM429445, GSM429446, GSM429447, GSM429448, GSM429449, GSM429451
Series (1)
GSE17165 Deregulated expression of cytokine receptor gene, CRLF2, is involved in lymphoid transformation in BCP-ALL

Data table header descriptions
ID
Row
Col
accessions
GB_LIST
SubTypeMask
SubTypeName
Start
SEQUENCE
ProbeUID
ControlType
ProbeName
GeneName
SystematicName
Description
GB_RANGE
SPOT_ID

Data table
ID Row Col accessions GB_LIST SubTypeMask SubTypeName Start SEQUENCE ProbeUID ControlType ProbeName GeneName SystematicName Description GB_RANGE SPOT_ID
1 1 1 0 0 0 1 HsCGHBrightCorner HsCGHBrightCorner HsCGHBrightCorner HsCGHBrightCorner
2 1 2 66 Structural 0 1 1 DarkCorner DarkCorner DarkCorner DarkCorner
3 1 3 66 Structural 0 1 1 DarkCorner DarkCorner DarkCorner DarkCorner
4 1 4 ref|NM_001080503 NM_001080503 0 0 GGTGCTCAGAAAATAGGAGCCTAAAAAAGGATTAAGGAAGATTTTACTGAAGATATGCTG 3 0 A_14_P126518 LOC126075 chr19:11318935-11318995 ref|Homo sapiens hypothetical protein LOC126075 (LOC126075), mRNA. NC_000019.8[11318935..11318995]
5 1 5 ref|NM_018482 NM_018482 0 0 GTGCTTACCTTGACCAGAATTATATATTGCTTTTACAGACTTCTTCACTTTCTGAAGGGC 5 0 A_16_P02023436 DDEF1 chr8:131318341-131318401 ref|Homo sapiens development and differentiation enhancing factor 1 (DDEF1), mRNA. NC_000008.9[131318341..131318401]
6 1 6 0 0 GTTTACTCAATTGGGTCACTATATTACCATCTTCTTGAGGTCTATAAGAATGCCCTTTGC 7 0 A_16_P00810601 chr3:131458003-131458063 chr3:131458003-131458063 Unknown NC_000003.10[131458003..131458063]
7 1 7 ref|NM_006157 NM_006157 0 0 AAGGCCAAAAGTGTAAACACAATGAATATGCATCATGACATTAACAATTTGAGACCCTGA 9 0 A_14_P135125 NELL1 chr11:21420941-21421001 ref|Homo sapiens NEL-like 1 (chicken) (NELL1), mRNA. NC_000011.8[21420941..21421001]
8 1 8 ref|NM_014361|ref|NM_175566 NM_014361, NM_175566 0 0 GCAGTCAACTTTGTAGAGAACTATATGAAAACAGGACAAGATCTTAAACTGGAATGGCTG 11 0 A_16_P19342549 CNTN5 chr11:98553874-98553934 ref|Homo sapiens contactin 5 (CNTN5), transcript variant 1, mRNA. NC_000011.8[98553874..98553934]
9 1 9 ref|NM_002012 NM_002012 0 0 AGCATTCTATTTGTGTGCCTCTATTTCTAGATACAGCAAAGACTTAAACTCCAAGTCCTC 13 0 A_16_P16245755 FHIT chr3:60684588-60684648 ref|Homo sapiens fragile histidine triad gene (FHIT), mRNA. NC_000003.10[60684588..60684648]
10 1 10 0 0 AGTAACTTTGACAATAGGTTGACTTACAAGTGGAATTGGAATTGGAAATTTCTTGTGGCT 15 0 A_16_P35323848 chr1:156508874-156508934 chr1:156508874-156508934 Unknown NC_000001.9[156508874..156508934]
11 1 11 ref|NM_005711 NM_005711 0 0 GGCTACTTTCTTTCCCTAATATATTTCTACCAATGCGAATAATTCAGGAAACAATGAGAG 17 0 A_16_P17191311 EDIL3 chr5:83274687-83274747 ref|Homo sapiens EGF-like repeats and discoidin I-like domains 3 (EDIL3), mRNA. NC_000005.8[83274687..83274747]
12 1 12 0 0 AAAATTGACAACTGTTTGCATCCATAATTTCTGAAGTGTCCACTATGAATGACTCTTCCC 19 0 A_16_P17143727 chr5:63340356-63340416 chr5:63340356-63340416 Unknown NC_000005.8[63340356..63340416]
13 1 13 0 0 AATTTACTTTGTTCCATGTAGGAACAAAGTAGGAAGTATTTATGTCACTCGGTATGGGAC 21 0 A_14_P108988 chr6:100749502-100749562 chr6:100749502-100749562 Unknown NC_000006.10[100749502..100749562]
14 1 14 0 0 GAACTTGTTTAATAAATGGGAAACTGACCTTTGCTATACTTTTCCCACGTGCTTTCATTT 23 0 A_14_P102558 chr17:53388467-53388527 chr17:53388467-53388527 Unknown NC_000017.9[53388467..53388527]
15 1 15 0 0 GTCTTCCATGTGAAAGGTTCTTTGCAAGAGGAAAGCCTTAGGGACAAGATT 25 0 A_14_P107820 A_14_P107820 A_14_P107820 Unknown
16 1 16 0 0 CTAATCACATTAATAGGAAAATGCTGAGTTCTCTCAGGGCAGTAAACAGACATCTTTGAC 27 0 A_16_P03591394 chr21:42017491-42017551 chr21:42017491-42017551 Unknown NC_000021.7[42017491..42017551]
17 1 17 0 0 AACAGAACCGTTATCTCACTGAGAACTACATGTCATTCTACTCCCCACTTTCAATTTTAT 29 0 A_16_P17345102 chr5:148926531-148926591 chr5:148926531-148926591 Unknown NC_000005.8[148926531..148926591]
18 1 18 ref|NM_014636 NM_014636 0 0 CTGAACTCTCAGGAATTATACCTGACACTGCCGTAAAATGAACAAAGGGAAGG 31 0 A_14_P111138 RALGPS1 chr9:129014464-129014517 ref|Homo sapiens Ral GEF with PH domain and SH3 binding motif 1 (RALGPS1), mRNA. NC_000009.10[129014464..129014517]
19 1 19 0 0 ATGATTACAAAATGTTCCCCCTAAAAAAAACTTTCATTTATTGACATTTGTGCCCCCAGA 33 0 A_14_P117413 chr20:32233258-32233318 chr20:32233258-32233318 Unknown NC_000020.9[32233258..32233318]
20 1 20 ref|NM_152996 NM_152996 0 0 CTATCAGGGTGCAAGTATCTTACTACTTAGCCTAAGGATGGGAAAATATCTCTTCCTAAT 35 0 A_14_P122321 ST6GALNAC3 chr1:76867547-76867607 ref|Homo sapiens ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1, 3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 3 (ST6GALNAC3), mRNA. NC_000001.9[76867547..76867607]

Total number of rows: 105072

Table truncated, full table size 25015 Kbytes.




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