|
| Status |
Public on Jul 18, 2009 |
| Title |
Patient ID 7104 |
| Sample type |
genomic |
| |
|
| Channel 1 |
| Source name |
DNA from bone marrow
|
| Organism |
Homo sapiens |
| Characteristics |
gender: male
patient id: 7104
|
| Extracted molecule |
genomic DNA |
| Extraction protocol |
Patient DNA received from regional cytogenetic laboratories. Cell-lines DNA extracted using Qiagen Blood and Tissue Kit.
|
| Label |
Cy5
|
| Label protocol |
as per manufacturers protocol for GPL4093 105K arrays
|
| |
|
| Channel 2 |
| Source name |
gender matched reference DNA
|
| Organism |
Homo sapiens |
| Characteristics |
reference: gender matched reference DNA
|
| Extracted molecule |
genomic DNA |
| Extraction protocol |
Patient DNA received from regional cytogenetic laboratories. Cell-lines DNA extracted using Qiagen Blood and Tissue Kit.
|
| Label |
Cy3
|
| Label protocol |
as per manufacturers protocol for GPL4093 105K arrays
|
| |
|
| |
| Hybridization protocol |
as per manufacturers protocol for GPL4093 105K arrays
|
| Scan protocol |
as per manufacturers protocol for GPL4093 105K arrays
|
| Description |
Patient ID 7104 DNA
|
| Data processing |
Agilent Feature Extraction Software (v 9.5) was used for background subtraction and liner and LOWESS normalisation.
|
| |
|
| Submission date |
Jul 17, 2009 |
| Last update date |
Jul 17, 2009 |
| Contact name |
Vikki Rand |
| E-mail(s) |
[email protected]
|
| Organization name |
Newcastle University
|
| Department |
Northern Institute for Cancer Research
|
| Lab |
Lymphoma Genomics
|
| Street address |
Paul O'Gorman Building, Newcastle University
|
| City |
Newcastle Upon Tyne |
| State/province |
Tyne and Wear |
| ZIP/Postal code |
NE12 4HH |
| Country |
United Kingdom |
| |
|
| Platform ID |
GPL8876 |
| Series (1) |
| GSE17165 |
Deregulated expression of cytokine receptor gene, CRLF2, is involved in lymphoid transformation in BCP-ALL |
|
