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GEO accession:
Series GSE139468
Query DataSets for GSE139468
Status
Public on May 11, 2020
Title
Selective Mediator dependence of cell-type-specifying transcription
Organism
Homo sapiens
Experiment type
Expression profiling by high throughput sequencing
Other
Genome binding/occupancy profiling by high throughput sequencing
Summary
This SuperSeries is composed of the SubSeries listed below.
Overall design
Refer to individual Series
Citation(s)
32483291
Submission date
Oct 28, 2019
Last update date
Aug 17, 2020
Contact name
Georg E Winter
Organization name
CeMM - Research Institute for Molecular Medicine of the Austrian Academy of Sciences
Street address
Lazarettgasse 14, AKH BT25.3
City
Wien
State/province
Austria
ZIP/Postal code
1090
Country
Austria
Platforms (4)
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GPL16791
Illumina HiSeq 2500 (Homo sapiens)
GPL18573
Illumina NextSeq 500 (Homo sapiens)
GPL21290
Illumina HiSeq 3000 (Homo sapiens)
GPL21697
NextSeq 550 (Homo sapiens)
Samples (125)
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GSM4141917
CDK9_DMSO_A
GSM4141918
CDK9_DMSO_B
GSM4141919
CDK9_DMSO_C
GSM4141920
CDK9_dTAG_7_A
GSM4141921
CDK9_dTAG_7_B
GSM4141922
CDK9_dTAG_7_C
GSM4141923
MED1_DMSO_A
GSM4141924
MED1_DMSO_B
GSM4141925
MED1_DMSO_C
GSM4141926
MED1_dTAG_7_A
GSM4141927
MED1_dTAG_7_B
GSM4141928
MED1_dTAG_7_C
GSM4141929
MED10_DMSO_A
GSM4141930
MED10_DMSO_B
GSM4141931
MED10_DMSO_C
GSM4141932
MED10_dTAG_7_A
GSM4141933
MED10_dTAG_7_B
GSM4141934
MED10_dTAG_7_C
GSM4141935
MED12_DMSO_A
GSM4141936
MED12_DMSO_B
GSM4141937
MED12_DMSO_C
GSM4141938
MED12_dTAG_7_A
GSM4141939
MED12_dTAG_7_B
GSM4141940
MED12_dTAG_7_C
GSM4141941
MED14_DMSO_A
GSM4141942
MED14_DMSO_B
GSM4141943
MED14_DMSO_C
GSM4141944
MED14_dTAG_7_A
GSM4141945
MED14_dTAG_7_B
GSM4141946
MED14_dTAG_7_C
GSM4141947
MED26_DMSO_A
GSM4141948
MED26_DMSO_B
GSM4141949
MED26_DMSO_C
GSM4141950
MED26_dTAG_7_A
GSM4141951
MED26_dTAG_7_B
GSM4141952
MED26_dTAG_7_C
GSM4141953
MED28_DMSO_A
GSM4141954
MED28_DMSO_B
GSM4141955
MED28_DMSO_C
GSM4141956
MED28_dTAG_7_A
GSM4141957
MED28_dTAG_7_B
GSM4141958
MED28_dTAG_7_C
GSM4141959
MED31_DMSO_A
GSM4141960
MED31_DMSO_B
GSM4141961
MED31_DMSO_C
GSM4141962
MED31_dTAG_7_A
GSM4141963
MED31_dTAG_7_B
GSM4141964
MED31_dTAG_7_C
GSM4141965
MED6_DMSO_A
GSM4141966
MED6_DMSO_B
GSM4141967
MED6_DMSO_C
GSM4141968
MED6_dTAG_7_A
GSM4141969
MED6_dTAG_7_B
GSM4141970
MED6_dTAG_7_C
GSM4141971
WT_dBET6_A
GSM4141972
WT_dBET6_B
GSM4141973
WT_dBET6_C
GSM4141974
WT_DMSO_A
GSM4141975
WT_DMSO_B
GSM4141976
WT_DMSO_C
GSM4141977
WT_dTAG_7_A
GSM4141978
WT_dTAG_7_B
GSM4141979
WT_dTAG_7_C
GSM4141980
WT_THAL-SNS-032_A
GSM4141981
WT_THAL-SNS-032_B
GSM4141982
WT_THAL-SNS-032_C
GSM4141983
PRO-seq_MJ-19-14_MED14-dTAG_1h_DMSO_A
GSM4141984
PRO-seq_MJ-19-14_MED14-dTAG_1h_DMSO_B
GSM4141985
PRO-seq_MJ-19-14_MED14-dTAG_1h_dTAG7_A
GSM4141986
PRO-seq_MJ-19-14_MED14-dTAG_1h_dTAG7_B
GSM4141987
PRO-seq_MJ-19-30_MED14-dTAG_2h_DMSO_A
GSM4141988
PRO-seq_MJ-19-30_MED14-dTAG_2h_DMSO_B
GSM4141989
PRO-seq_MJ-19-30_MED14-dTAG_2h_dTAG7_A
GSM4141990
PRO-seq_MJ-19-30_MED14-dTAG_2h_dTAG7_B
GSM4141991
PRO-seq_MJ-19-30_MED14-dTAG_30min_NVP2_A
GSM4141992
PRO-seq_MJ-19-30_MED14-dTAG_30min_NVP2_B
GSM4141993
PRO-seq_MJ-19-30_MED14-dTAG_2h_dTAG7_30min_NVP2_A
GSM4141994
PRO-seq_MJ-19-30_MED14-dTAG_2h_dTAG7_30min_NVP2_B
GSM4141995
PRO-seq_MJ-17-76_MED14-dTAG_2h_DMSO_C
GSM4141996
PRO-seq_MJ-17-76_MED14-dTAG_2h_DMSO_D
GSM4141997
PRO-seq_MJ-17-76_MED14-dTAG_2h_dTAG7_C
GSM4141998
PRO-seq_MJ-17-76_MED14-dTAG_2h_dTAG7_D
GSM4141999
TT-seq_MJ-19-1_MED14-dTAG_1h_DMSO_A
GSM4142000
TT-seq_MJ-19-1_MED14-dTAG_1h_DMSO_B
GSM4142001
TT-seq_MJ-19-1_MED14-dTAG_1h_dTAG7_A
GSM4142002
TT-seq_MJ-19-1_MED14-dTAG_1h_dTAG7_B
GSM4142003
TT-seq_MJ-19-1_MED14-dTAG_2h_DMSO_A
GSM4142004
TT-seq_MJ-19-1_MED14-dTAG_2h_DMSO_B
GSM4142005
TT-seq_MJ-19-1_MED14-dTAG_2h_dTAG7_A
GSM4142006
TT-seq_MJ-19-1_MED14-dTAG_2h_dTAG7_B
GSM4142007
TT-seq_MJ-19-29_MED14-dTAG_2h_DMSO_A
GSM4142008
TT-seq_MJ-19-29_MED14-dTAG_2h_DMSO_B
GSM4142009
TT-seq_MJ-19-29_MED14-dTAG_2h_dTAG7_A
GSM4142010
TT-seq_MJ-19-29_MED14-dTAG_2h_dTAG7_B
GSM4142011
TT-seq_MJ-19-29_MED14-dTAG_30min_NVP2_A
GSM4142012
TT-seq_MJ-19-29_MED14-dTAG_30min_NVP2_B
GSM4142013
TT-seq_MJ-19-29_MED14-dTAG_2h_dTAG7_30min_NVP2_A
GSM4142014
TT-seq_MJ-19-29_MED14-dTAG_2h_dTAG7_30min_NVP2_B
GSM4142015
MYB-SE_4C-seq_MED14-dTAG_2h_DMSO_A
GSM4142016
MYB-SE_4C-seq_MED14-dTAG_2h_DMSO_B
GSM4142017
MYB-SE_4C-seq_MED14-dTAG_2h_DMSO_C
GSM4142018
MYB-SE_4C-seq_MED14-dTAG_2h_dTAG7_A
GSM4142019
MYB-SE_4C-seq_MED14-dTAG_2h_dTAG7_B
GSM4142020
MYB-SE_4C-seq_MED14-dTAG_2h_dTAG7_C
GSM4142021
SATB1-SE_4C-seq_MED14-dTAG_2h_DMSO_A
GSM4142022
SATB1-SE_4C-seq_MED14-dTAG_2h_DMSO_B
GSM4142023
SATB1-SE_4C-seq_MED14-dTAG_2h_DMSO_C
GSM4142024
SATB1-SE_4C-seq_MED14-dTAG_2h_dTAG7_A
GSM4142025
SATB1-SE_4C-seq_MED14-dTAG_2h_dTAG7_B
GSM4142026
SATB1-SE_4C-seq_MED14-dTAG_2h_dTAG7_C
GSM4142027
H3K27ac_HiChIP_MED14-dTAG_2h_DMSO_A
GSM4142028
H3K27ac_HiChIP_MED14-dTAG_2h_DMSO_B
GSM4142029
H3K27ac_HiChIP_MED14-dTAG_2h_dTAG7_A
GSM4142030
H3K27ac_HiChIP_MED14-dTAG_2h_dTAG7_B
GSM4142031
KBM7_H3K27ac
GSM4142032
KBM7_H3K4me3
GSM4142033
KBM7_input
GSM4403632
TT-seq_MJ-20-5_HCT-116_MED14-dTAG_1h_DMSO_A
GSM4403633
TT-seq_MJ-20-5_HCT-116_MED14-dTAG_1h_DMSO_B
GSM4403634
TT-seq_MJ-20-5_HCT-116_MED14-dTAG_1h_dTAGV-1_A
GSM4403635
TT-seq_MJ-20-5_HCT-116_MED14-dTAG_1h_dTAGV-1_B
GSM4403636
TT-seq_MJ-20-5_HCT-116_MED14-dTAG_2h_DMSO_A
GSM4403637
TT-seq_MJ-20-5_HCT-116_MED14-dTAG_2h_DMSO_B
GSM4403638
TT-seq_MJ-20-5_HCT-116_MED14-dTAG_2h_dTAGV-1_A
GSM4403639
TT-seq_MJ-20-5_HCT-116_MED14-dTAG_2h_dTAGV-1_B
This SuperSeries is composed of the following SubSeries:
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GSE139461
Selective Mediator-dependence of cell type-specifying transcription [Quant-Seq]
GSE139462
Selective Mediator-dependence of cell type-specifying transcription [PRO-seq]
GSE139463
Selective Mediator-dependence of cell type-specifying transcription [TT-seq]
GSE139464
Selective Mediator-dependence of cell type-specifying transcription [4C-seq]
GSE139466
Selective Mediator-dependence of cell type-specifying transcription [HiChIP]
GSE139467
Selective Mediator-dependence of cell type-specifying transcription [ChIP-seq]
Relations
BioProject
PRJNA579913
Download family
Format
SOFT formatted family file(s)
SOFT
MINiML formatted family file(s)
MINiML
Series Matrix File(s)
TXT
Supplementary file
Size
Download
File type/resource
GSE139468_RAW.tar
17.8 Gb
(http)
(custom)
TAR (of BW, HIC, NARROWPEAK)
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