|
| Status |
Public on Apr 20, 2010 |
| Title |
Whole genome transcriptome profiling of Pusa 1266 and Pusa Basmati 1 in panicle primordia stage |
| Organism |
Oryza sativa |
| Experiment type |
Expression profiling by array
|
| Summary |
The aim of this study was to identify candidate genes responsible for grain number per panicle between a pair of rice varieties (Pusa 1266 and Pusa Basmati 1) by combining QTL analysis with expression analysis. Microarray analysis of RNA extracted from the panicle primordia showed 2741 differentially expressed genes. The differentially expressed genes were shortened to 18 on the basis of their occurance in the QTL region (responsible for grain number regulation) detected in RIL population derived from Pusa 1266 and Pusa Basmati 1.
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| |
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| Overall design |
RNA from the stage '0' panicle primordia of Pusa 1266 and Pusa Basmati 1 were analysed in two different biological replications (A and B) making total four samples
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| |
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| Contributor(s) |
Deshmukh RK, Singh A, Jain N, Singh AK, Gaikwad K, Sharma TR, Mohapatra T, Singh NK |
| Citation(s) |
20376514 |
| |
| Submission date |
Apr 30, 2009 |
| Last update date |
Dec 27, 2017 |
| Contact name |
Rupesh Kailasrao Deshmukh |
| E-mail(s) |
[email protected]
|
| Phone |
09968886957
|
| Organization name |
National Research Center on Plant Biotechnology
|
| Department |
Rice Genome Laboratory
|
| Lab |
Rice Functional Genomics
|
| Street address |
Libraryavenue, PUSA
|
| City |
New Delhi |
| State/province |
Delhi |
| ZIP/Postal code |
110012 |
| Country |
India |
| |
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| Platforms (1) |
| GPL2025 |
[Rice] Affymetrix Rice Genome Array |
|
| Samples (4)
|
| GSM399470 |
Pusa1266 (Low grain number) replicate 1 |
| GSM399471 |
Pusa1266 (Low grain number) replicate 2 |
| GSM399472 |
Pusa Basmati 1 (Low grain number) replicate 1 |
| GSM399473 |
Pusa Basmati 1 (Low grain number) replicate 2 |
|
| Relations |
| BioProject |
PRJNA116909 |
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