NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Series GSE159281 Query DataSets for GSE159281
Status Public on Aug 02, 2021
Title Single-oocyte transcriptome analysis reveals aging-associated effects influenced by life stage and calorie restriction
Organism Mus musculus
Experiment type Expression profiling by high throughput sequencing
Summary Chromosome segregation errors in oocytes lead to the production of aneuploid eggs, which are the leading cause of pregnancy loss and of several congenital diseases such as Down syndrome. The frequency of chromosome segregation errors in oocytes increases with maternal age, especially at a late stage of reproductive life. How aging at various life stages affects oocytes differently remains poorly understood. In this study, we describe aging-associated changes in the transcriptome profile of mouse oocytes throughout reproductive life. Our single-oocyte comprehensive RNA sequencing using RamDA-seq revealed that oocytes undergo transcriptome changes at a late reproductive stage, whereas their surrounding cumulus cells exhibit transcriptome changes at an earlier stage. Calorie restriction, a paradigm that reportedly prevents aging-associated egg aneuploidy, promotes a transcriptome shift in oocytes with the up-regulation of genes involved in chromosome segregation. This shift is accompanied by the improved maintenance of chromosomal cohesin, the loss of which is a hallmark of oocyte aging and causes chromosome segregation errors. These findings have implications for understanding how oocytes undergo aging-associated functional decline throughout their reproductive life in a context-dependent manner.
 
Overall design Single oocytes and their surrounding cumulus cells were analyzed for each age/diet class in two independent experiments: 2 months (Young), 4months, 9 months (Middle), 14 months (Old), 9 months (Calorie Restriction) with hyperovulation, and 2 months without hyperovulation.
 
Contributor(s) Mishina T, Tabata N, Hayashi T, Yoshimura M, Umeda M, Mori M, Ikawa Y, Hamada H, Nikaido I, Kitajima TS
Citation(s) 34245092
Submission date Oct 09, 2020
Last update date Aug 03, 2021
Contact name Tomoya S KITAJIMA
E-mail(s) [email protected]
Organization name RIKEN
Department Center for Biosystems Dynamics Research
Lab Laboratory for Chromosome Segregation
Street address 2-2-3 Minatojima-minamimachi
City Kobe
ZIP/Postal code 650-0047
Country Japan
 
Platforms (1)
GPL19057 Illumina NextSeq 500 (Mus musculus)
Samples (401)
GSM4824706 Young1_GV033_oocyte
GSM4824707 Young1_GV034_oocyte
GSM4824708 Young1_GV035_oocyte
Relations
BioProject PRJNA668285
SRA SRP286856

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE159281_count_GENCODEvM15_oocyte_cumulus.txt.gz 4.6 Mb (ftp)(http) TXT
GSE159281_count_GENCODEvM15_oocyte_cumulus_rep2.txt.gz 6.9 Mb (ftp)(http) TXT
GSE159281_rpkm_GENCODEvM15_oocyte_cumulus.txt.gz 16.7 Mb (ftp)(http) TXT
GSE159281_rpkm_GENCODEvM15_oocyte_cumulus_rep2.txt.gz 23.0 Mb (ftp)(http) TXT
SRA Run SelectorHelp
Raw data are available in SRA
Processed data are available on Series record

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap