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Series GSE177616 Query DataSets for GSE177616
Status Public on Sep 15, 2021
Title Human blastoids model blastocyst development and implantation [scRNAseq]
Organism Homo sapiens
Experiment type Expression profiling by high throughput sequencing
Summary Shortly after fertilization, human embryos implant into the uterus. This requires the formation of a blastocyst consisting of a sphere encircling a cavity lodging the embryo proper. Stem cells can form blastocyst models, which we termed blastoid. Here we show that naïve human pluripotent stem cells (hPSCs) triply inhibited for the Hippo, TGFb, and ERK pathways consistently and efficiently (>70%) form blastoids that generate transcriptional pre-implantation (>95%) analogs of the three founding lineages (trophoblast, epiblast, hypoblast), and in the sequential and timely manner of blastocysts. Blastoids spontaneously form an axis marked by maturation of the polar region, which acquires the potential to specifically attach to hormonally-stimulated endometrial cells, as during in utero implantation. Such human blastoids are scalable, versatile, and ethical models to explore human implantation and development.
 
Overall design Blastoids and stem cells with various treatments
 
Contributor(s) Kagawa H, Javali A, Khoei HH, Sommer TM, Reimer YS, Sestini G, Rivron N
Citation(s) 34856602
Submission date Jun 12, 2021
Last update date Dec 15, 2021
Contact name Giovanni Sestini
Organization name IMBA - Institute of Molecular Biotechnology
Street address Dr.-Bohr-Gasse 3, 1030 Wien
City Vienna
ZIP/Postal code 1030
Country Austria
 
Platforms (1)
GPL24676 Illumina NovaSeq 6000 (Homo sapiens)
Samples (2715)
GSM5375527 primed H9-150182
GSM5375528 primed H9-150183
GSM5375529 primed H9-150185
This SubSeries is part of SuperSeries:
GSE177689 Human blastoids model blastocyst development and implantation
Relations
BioProject PRJNA737134
SRA SRP323840

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE177616_RAW.tar 451.3 Mb (http)(custom) TAR (of TXT)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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