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Series GSE179040 Query DataSets for GSE179040
Status Public on Sep 15, 2021
Title Human blastoids model blastocyst development and implantation [Bulk RNA-seq]
Organism Homo sapiens
Experiment type Expression profiling by high throughput sequencing
Summary Shortly after fertilization, human embryos implant into the uterus. This requires the formation of a blastocyst consisting of a sphere encircling a cavity lodging the embryo proper. Appropriate stem cells can form a blastocyst model, which we termed blastoid. Here we show that naive human pluripotent stem cells (hPSCs) triply inhibited for the Hippo, TGF-β, and ERK pathways consistently and efficiently (>70%) form blastoids that generate transcriptional pre-implantation analogs of the three founding lineages (trophoblast, epiblast, primitive endoderm; >97%) according to the  sequence and pace of blastocyst development. Blastoids spontaneously form an axis marked by the maturation of the polar region, which acquires the potential to specifically attach to hormonally stimulated endometrial cells, as during in utero implantation. Such human blastoids are scalable, versatile, and ethical models to explore human implantation and development.
 
Overall design 61 samples
 
Citation(s) 34856602
Submission date Jun 28, 2021
Last update date Dec 15, 2021
Contact name Giovanni Sestini
Organization name IMBA - Institute of Molecular Biotechnology
Street address Dr.-Bohr-Gasse 3, 1030 Wien
City Vienna
ZIP/Postal code 1030
Country Austria
 
Platforms (1)
GPL24676 Illumina NovaSeq 6000 (Homo sapiens)
Samples (61)
GSM5404349 160505-Naive_re_derived_C1
GSM5404350 160506-Naive_re_derived_C1
GSM5404351 160507-Naive_re_derived_C1
This SubSeries is part of SuperSeries:
GSE177689 Human blastoids model blastocyst development and implantation
Relations
BioProject PRJNA742004
SRA SRP325857

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE179040_RAW.tar 11.3 Mb (http)(custom) TAR (of TXT)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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