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| Status |
Public on Dec 01, 2023 |
| Title |
ideas-IDEAS project on nitrogen starvation |
| Organism |
Arabidopsis thaliana |
| Experiment type |
Expression profiling by high throughput sequencing
|
| Summary |
ngs2020_20_ideas-ideas- whole genome (nuclear and organellar) transcriptomic response to a moderate nitrogen starvation-In the IDEAS project, Arabidopsis thaliana Col0 plants were grown on soil from seed for 19 days on the Phenoscope (IJPB, Versailles). The plants were watered with nitrogen-sufficient or nitrogen-limiting solutions. 10 biological replicates were produced. For each sample, 3 rosettes were pooled to extract RNA. The libraries were generated with the Illumina Truseq stranded with ribozero plant leaf and sequenced on a NextSeq500 in single-end 75 bases.
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| |
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| Overall design |
20 samples with 5 biological replicats. treated vs untreated comparison
|
| Web link |
http://tools.ips2.u-psud.fr/CATdb
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| |
|
| Contributor(s) |
Alaunay A, Delannoy E, Rameau C, Rigaill G |
| Citation(s) |
37954572 |
| |
| Submission date |
Jun 07, 2023 |
| Last update date |
Dec 02, 2023 |
| Contact name |
Véronique BRUNAUD |
| E-mail(s) |
[email protected]
|
| Organization name |
INRAE - CNRS - UPSUD
|
| Lab |
IPS2
|
| Street address |
rue Noetzlin
|
| City |
Gif-sur-Yvette |
| ZIP/Postal code |
91190 |
| Country |
France |
| |
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| Platforms (1) |
| GPL19580 |
Illumina NextSeq 500 (Arabidopsis thaliana) |
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| Samples (20)
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| Relations |
| BioProject |
PRJNA981151 |
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