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Series GSE258007

Query DataSets for GSE258007

Status

Public on Feb 27, 2024

Title

TF ChIP-seq from whole organism (ENCSR710IDA)

Project

modENCODE

Organism

Caenorhabditis elegans

Experiment type

Genome binding/occupancy profiling by high throughput sequencing

Summary

ChIP-seq against eGFP-zag-1 in L4 larva worms.

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf

Overall design

https://www.encodeproject.org/ENCSR710IDA/

Citation(s)

22955616

BioProject

PRJNA63463

Submission date

Feb 25, 2024

Last update date

Sep 02, 2024

Contact name

ENCODE DCC

E-mail(s)

[email protected]

Organization name

ENCODE DCC

Street address

300 Pasteur Dr

City

Stanford

State/province

ZIP/Postal code

94305-5120

Country

USA

Platforms (1)

GPL13776

Illumina Genome Analyzer IIx (Caenorhabditis elegans)

Samples (2)

GSM8109009	TF ChIP-seq from whole organism (ENCLB591RFX)
GSM8109010	TF ChIP-seq from whole organism (ENCLB988RFO)

Relations

Reanalyzed by

GSE276166

Download family	Format
SOFT formatted family file(s)	SOFT
MINiML formatted family file(s)	MINiML
Series Matrix File(s)	TXT

Supplementary file	Size	Download	File type/resource
GSE258007_ENCFF131EFO_read-depth_normalized_signal_ce11.bigWig	9.6 Mb	(ftp)(http)	BIGWIG
GSE258007_ENCFF152KBY_peaks_and_background_as_input_for_IDR_ce10.bigBed	208.8 Kb	(ftp)(http)	BIGBED
GSE258007_ENCFF227VXQ_optimal_IDR_thresholded_peaks_ce11.bed.gz	5.9 Kb	(ftp)(http)	BED
GSE258007_ENCFF234RXL_signal_of_unique_reads_ce10.bigWig	9.5 Mb	(ftp)(http)	BIGWIG
GSE258007_ENCFF373SKT_optimal_IDR_thresholded_peaks_ce11.bigBed	48.2 Kb	(ftp)(http)	BIGBED
GSE258007_ENCFF400ZYN_control_normalized_signal_ce11.bigWig	9.8 Mb	(ftp)(http)	BIGWIG
GSE258007_ENCFF463JVK_control_normalized_signal_ce10.bigWig	9.8 Mb	(ftp)(http)	BIGWIG
GSE258007_ENCFF540PCM_optimal_IDR_thresholded_peaks_ce10.bed.gz	5.0 Kb	(ftp)(http)	BED
GSE258007_ENCFF705AMG_peaks_and_background_as_input_for_IDR_ce11.bed.gz	103.5 Kb	(ftp)(http)	BED
GSE258007_ENCFF772ABU_read-depth_normalized_signal_ce10.bigWig	9.6 Mb	(ftp)(http)	BIGWIG
GSE258007_ENCFF797AGB_signal_of_unique_reads_ce11.bigWig	9.5 Mb	(ftp)(http)	BIGWIG
GSE258007_ENCFF850NGE_peaks_and_background_as_input_for_IDR_ce11.bigBed	219.2 Kb	(ftp)(http)	BIGBED
GSE258007_ENCFF906IZB_optimal_IDR_thresholded_peaks_ce10.bigBed	46.9 Kb	(ftp)(http)	BIGBED
GSE258007_ENCFF995HYO_peaks_and_background_as_input_for_IDR_ce10.bed.gz	95.9 Kb	(ftp)(http)	BED
GSE258007_RAW.tar	121.4 Mb	(http)(custom)	TAR (of BED, BIGBED, BIGWIG, TXT)
Raw data are available in SRA