|
| Status |
Public on Feb 27, 2024 |
| Title |
TF ChIP-seq from whole organism (ENCLB591RFX) |
| Sample type |
SRA |
| |
|
| Source name |
Caenorhabditis elegans strain OP83 (unc-119(ed3) III; wgIs83) mixed sex L4 larva insertion targeting C. elegans zag-1
|
| Organism |
Caenorhabditis elegans |
| Characteristics |
antibody: zag-1
cell_type: whole organism
biomaterial_type: whole organisms
biosample encode accession: ENCBS910DKO (SAMN40085858)
collection date: not applicable
geographic location: not applicable
encode accession: ENCBS910DKO
Sex: pooled male and female
dev stage: L4 larva
age: unknown
donor_id: ENCDO786FJI
lab: Michael Snyder, Stanford
source: CGC
link: ENCBS910DKO at ENCODE; https://www.encodeproject.org/ENCBS910DKO/
|
| Extracted molecule |
genomic DNA |
| Extraction protocol |
not provided
|
| |
|
| Library strategy |
ChIP-Seq |
| Library source |
genomic |
| Library selection |
ChIP |
| Instrument model |
Illumina Genome Analyzer IIx |
| |
|
| Description |
https://www.encodeproject.org/experiments/ENCSR710IDA/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq against eGFP-zag-1 in L4 larva worms.
experiment encode accession: ENCSR710IDA
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR509HPC
encode release date: 2014-03-31
lab: Michael Snyder, Stanford
library encode accession: ENCLB591RFX
size range: 150-350
|
| Data processing |
See GSM*_README.txt supplementary file linked below
|
| |
|
| Submission date |
Feb 25, 2024 |
| Last update date |
Feb 27, 2024 |
| Contact name |
ENCODE DCC |
| E-mail(s) |
[email protected]
|
| Organization name |
ENCODE DCC
|
| Street address |
300 Pasteur Dr
|
| City |
Stanford |
| State/province |
CA |
| ZIP/Postal code |
94305-5120 |
| Country |
USA |
| |
|
| Platform ID |
GPL13776 |
| Series (1) |
| GSE258007 |
TF ChIP-seq from whole organism (ENCSR710IDA) |
|
| Relations |
| BioSample |
SAMN40085858 |
| Supplementary file |
Size |
Download |
File type/resource |
| GSM8109009_ENCFF099ODI_signal_of_unique_reads_ce10.bigWig |
9.6 Mb |
(ftp)(http) |
BIGWIG |
| GSM8109009_ENCFF186OZT_control_normalized_signal_ce11.bigWig |
9.8 Mb |
(ftp)(http) |
BIGWIG |
| GSM8109009_ENCFF200RLF_peaks_and_background_as_input_for_IDR_ce10.bed.gz |
318.1 Kb |
(ftp)(http) |
BED |
| GSM8109009_ENCFF280BEY_read-depth_normalized_signal_ce10.bigWig |
9.6 Mb |
(ftp)(http) |
BIGWIG |
| GSM8109009_ENCFF463QOZ_peaks_and_background_as_input_for_IDR_ce10.bigBed |
509.4 Kb |
(ftp)(http) |
BIGBED |
| GSM8109009_ENCFF574TVX_read-depth_normalized_signal_ce11.bigWig |
9.6 Mb |
(ftp)(http) |
BIGWIG |
| GSM8109009_ENCFF772WVV_signal_of_unique_reads_ce11.bigWig |
9.6 Mb |
(ftp)(http) |
BIGWIG |
| GSM8109009_ENCFF869MUD_peaks_and_background_as_input_for_IDR_ce11.bed.gz |
298.2 Kb |
(ftp)(http) |
BED |
| GSM8109009_ENCFF947BWV_peaks_and_background_as_input_for_IDR_ce11.bigBed |
483.6 Kb |
(ftp)(http) |
BIGBED |
| GSM8109009_ENCFF965RET_control_normalized_signal_ce10.bigWig |
9.8 Mb |
(ftp)(http) |
BIGWIG |
| GSM8109009_ENCLB591RFX_README.txt.gz |
1.8 Kb |
(ftp)(http) |
TXT |
| Raw data are available in SRA |
