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Series GSE26280 Query DataSets for GSE26280
Status Public on Dec 23, 2010
Title Genome-wide temporal-spatial gene expression profiling of drought responsiveness in rice
Organism Oryza sativa
Experiment type Expression profiling by array
Summary Rice is highly sensitive to drought, and the effect of drought may vary with the different genotypes and development stages. Genome-wide gene expression profiling was used as the initial point to dissect molecular genetic mechanism of this complex trait and provide valuable information for the improvement of drought tolerance in rice. Affymetrix rice genome array containing 48,564 japonica and 1,260 indica sequences was used to analyze the gene expression pattern of rice exposed to drought stress. The transcriptome from leaf, root, and young panicle at three developmental stages was comparatively analyzed combined with bioinformatics exploring drought stress related cis-elements.
 
Overall design In this study, the gene expression patterns across six tissues including leaves and roots at tillering stage and panicle elongation stage, leaves and young panicle at booting stage ( TL: leaves at tillering stage; TR: roots at tillering stage; PL: leaves at panicle elongation stage; PR: roots at panicle elongation stage; BP: young panicle at booting stage; BL: leaves at booting stage) were characterized by using the Affymetrix rice microarray platform based on a drought tolerant rice line derived from IR64.
 
Contributor(s) Wang D, Pan Y, Zhao X, Zhu L, Zhang L, Fu B, Li Z
Citation(s) 21406116
Submission date Dec 22, 2010
Last update date Dec 27, 2017
Contact name pan yajiao
E-mail(s) [email protected]
Organization name The chinese academy of agriculture sciences
Street address Zhongguancun South Street No.12
City Beijing
ZIP/Postal code 100081
Country China
 
Platforms (1)
GPL2025 [Rice] Affymetrix Rice Genome Array
Samples (36)
GSM645322 normal leaves at tillering stage, biological rep1
GSM645323 normal leaves at tillering stage, biological rep2
GSM645324 normal leaves at tillering stage, biological rep3
Relations
BioProject PRJNA135151

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Supplementary file Size Download File type/resource
GSE26280_RAW.tar 158.5 Mb (http)(custom) TAR (of CEL)
Processed data included within Sample table
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