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Series GSE281811 Query DataSets for GSE281811
Status Public on Nov 13, 2024
Title Combined inhibition of histone methyltransferases EZH2 and DOT1L is an effective therapy for neuroblastoma
Organism Homo sapiens
Experiment type Expression profiling by array
Summary The child cancer, neuroblastoma (NB), is characterised by a low incidence of mutations and strong oncogenic embryonal driver signals. Many new targeted epigenetic modifier drugs have failed in human trials as monotherapy. We performed a high‐throughput, combination chromatin‐modifier drug screen against NB cells. We screened 13 drug candidates in 78 unique combinations. We found that the combination of two histone methyltransferase (HMT) inhibitors: GSK343, targeting EZH2, and SGC0946, targeting DOT1L, demonstrated the strongest synergy across 8 NB cell lines, with low normal fibroblast toxicity. High mRNA expression of both EZH2 and DOT1L in NB tumour samples correlated with the poorest patient survival. Combination HMT inhibitor treatment caused activation of ATF4‐mediated endoplasmic reticulum (ER) stress responses. In addition, glutathione and several amino acids were depleted by HMT inhibitor combination on mass spectrometry analysis. The combination of SGC0946 and GSK343 reduced tumour growth in comparison to single agents. Our results support further investigation of HMT inhibitor combinations as a therapeutic approach in NB.
 
Overall design SK‐N‐BE(2)‐C and KELLY neuroblastoma cell lines were seeded in T25 flasks. Following 24 h of incubation cell culture medium was replaced with medium containing either DMSO, 12.8 μM SGC0946, 12.8 μM GSK343 or a combination of both drugs. Treated cells were incubated for 6 h, followed by total RNA extraction and quantitation. RNA from treated samples were then subject to microarray profiling via the PrimeView Human Genome U219 Array (#901605 Applied Biosystems) according to manufacturer instructions, by the Ramaciotti Centre for Genomics (UNSW, Australia).
 
Contributor(s) Seneviratne JA
Citation(s) 39501501
Submission date Nov 13, 2024
Last update date Nov 14, 2024
Contact name Janith Seneviratne
E-mail(s) [email protected]
Organization name Peter MacCallum Cancer Centre
Lab Eckersley-Maslin
Street address Peter MacCallum Cancer Centre, 305 Grattan Street
City Melbourne
State/province VIC
ZIP/Postal code 3000
Country Australia
 
Platforms (1)
GPL13667 [HG-U219] Affymetrix Human Genome U219 Array
Samples (16)
GSM8630451 BE2C_DMSO_R1
GSM8630452 BE2C_DMSO_R2
GSM8630453 BE2C_GSK343_R1
Relations
BioProject PRJNA1185740

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Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE281811_RAW.tar 36.7 Mb (http)(custom) TAR (of CEL)
GSE281811_RMA_values.txt.gz 1.7 Mb (ftp)(http) TXT

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