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Series GSE282759 Query DataSets for GSE282759
Status Public on Nov 27, 2024
Title Raising NAD+ Level Stimulates Short-Chain Dehydrogenase/Reductase Proteins to Alleviate Heart Failure Independent of Mitochondrial Protein Deacetylation
Organism Mus musculus
Experiment type Expression profiling by high throughput sequencing
Summary BACKGROUND: Strategies to increase cellular NAD+ (oxidized nicotinamide adenine dinucleotide) level have prevented cardiac dysfunction in multiple models of heart failure, but molecular mechanisms remain unclear. Little is known about the benefits of NAD+-based therapies in failing hearts after the symptoms of heart failure have appeared. Most pretreatment regimens suggested mechanisms involving activation of sirtuin, especially Sirt3 (sirtuin 3), and mitochondrial protein acetylation. METHODS: We induced cardiac dysfunction by pressure overload in SIRT3-deficient (knockout) mice and compared their response with nicotinamide riboside chloride treatment with wild-type mice. To model a therapeutic approach, we initiated the treatment in mice with established cardiac dysfunction. RESULTS: We found nicotinamide riboside chloride improved mitochondrial function and blunted heart failure progression. Similar benefits were observed in wild-type and knockout mice. Boosting NAD+ level improved the function of NAD(H) redox sensitive SDR (short-chain dehydrogenase/reductase) family proteins. Upregulation of Mrpp2 (mitochondrial ribonuclease P protein 2), a multifunctional SDR protein and a subunit of mitochondrial ribonuclease P, improves mitochondrial DNA transcripts processing and electron transport chain function. Activation of SDRs in the retinol metabolism pathway stimulates RXRα (retinoid X receptor α)/PPARα (proliferator-activated receptor α) signaling and restores mitochondrial oxidative metabolism. Downregulation of Mrpp2 and impaired mitochondrial ribonuclease P were found in human failing hearts, suggesting a shared mechanism of defective mitochondrial biogenesis in mouse and human heart failure. CONCLUSIONS: These findings identify SDR proteins as important regulators of mitochondrial function and molecular targets of NAD+-based therapy. Furthermore, the benefit is observed regardless of Sirt3-mediated mitochondrial protein deacetylation, a widely held mechanism for NAD+-based therapy for heart failure. The data also show that NAD+-based therapy can be useful in pre-existing heart failure.
 
Overall design We performed RNA sequencing of Sham and TAC hearts treated with NR or vehicle. We then examined the enrichment of genes that belong to known molecular pathways from the Reactome database using gene set enrichment analysis (GSEA). GSEA was performed on a Preranked gene list as described in Nat Protoc. 2019 February ; 14(2): 482–517. doi:10.1038/s41596-018-0103-9.
 
Contributor(s) Walker M, Yuliang W
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Submission date Nov 25, 2024
Last update date Nov 27, 2024
Contact name Matthew Walker
E-mail(s) [email protected]
Organization name University of Washington
Street address 850 Republican
City Seattle
ZIP/Postal code 98109
Country USA
 
Platforms (1)
GPL23479 BGISEQ-500 (Mus musculus)
Samples (16)
GSM8650084 8501 Vehicle TAC
GSM8650085 8502 NR TAC
GSM8650086 8503 NR TAC
Relations
BioProject PRJNA1190378

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Supplementary file Size Download File type/resource
GSE282759_DESeq_NR-SHAM_NR-TAC.xlsx 2.1 Mb (ftp)(http) XLSX
GSE282759_DESeq_Vehicle-SHAM_NR-SHAM.xlsx 2.0 Mb (ftp)(http) XLSX
GSE282759_DESeq_Vehicle-SHAM_Vehicle-TAC.xlsx 2.1 Mb (ftp)(http) XLSX
GSE282759_DESeq_Vehicle-TAC_NR-TAC.xlsx 2.1 Mb (ftp)(http) XLSX
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