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| Status |
Public on Aug 05, 2018 |
| Title |
Arabidopsis thaliana wild type and PDKO3 mutant mechanical damage (MD) vs herbivore wounding (HW) |
| Organism |
Arabidopsis thaliana |
| Experiment type |
Expression profiling by array
|
| Summary |
Transcriptional profiling of Arabidopsis thaliana wild type (WT) and a line mutated in genes encoding plasmodesmata (PD) proteins (PDKO3) comparing MD (mechanical damage) and HW (herbivore wounding). The differences in the biochemical responses to herbivory seen in the PDKO3 when compared to the WT line, together with the absence of growth/developmental phenotypes in the former, prompted us to search for less obvious differences between the lines using gene expression profiling.
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| Overall design |
Two-condition experiment, MD vs. HW Arabidopsis leaves of two different lines WT and PDKO3. Biological replicates: 3 biological replicates for each condition. Additionally for two of the samples, 3 technical replicates were applied.
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| Contributor(s) |
Bertea CM, Maffei ME, Paponov IA, Li Y |
| Citation missing |
Has this study been published? Please login to update or notify GEO. |
| |
| Submission date |
Aug 08, 2011 |
| Last update date |
Aug 05, 2018 |
| Contact name |
Cinzia Margherita Bertea |
| E-mail(s) |
[email protected]
|
| Phone |
+39-011-6706361
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| Fax |
+39-011-6706364
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| Organization name |
University of Turin
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| Department |
Department of Life Sciences and Systems Biology
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| Lab |
Plant Physiology Unit
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| Street address |
via Quarello 11/A
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| City |
Turin |
| State/province |
To |
| ZIP/Postal code |
10135 |
| Country |
Italy |
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| Platforms (1) |
| GPL12621 |
Agilent-021169 Arabidopsis 4 Oligo Microarray (V4) (Probe Name version) |
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| Samples (8)
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| GSM774906 |
PDKO3 mechanical damage vs herbivore wounding 1 |
| GSM774907 |
PDKO3 mechanical damage vs herbivore wounding 2 |
| GSM774908 |
PDKO3 mechanical damage vs herbivore wounding 3 |
| GSM774909 |
Wild type mechanical damage vs herbivore wounding 1 |
| GSM774910 |
Wild type mechanical damage vs PDKO3 mechanical damage 1 |
| GSM774911 |
Wild type mechanical damage vs PDKO3 mechanical damage 2 |
| GSM774912 |
Wild type mechanical damage vs herbivore wounding 2 |
| GSM774913 |
Wild type mechanical damage vs herbivore wounding 3 |
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| Relations |
| BioProject |
PRJNA146133 |
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