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Series GSE38477 Query DataSets for GSE38477
Status Public on Jun 05, 2012
Title Conversion of mES to cXEN cells
Organism Mus musculus
Experiment type Expression profiling by array
Summary The inner cell mass of the mouse pre-implantation blastocyst is comprised of epiblast progenitor and primitive endoderm cells of which cognate embryonic (mESCs) or extra-embryonic (XEN) stem cell lines can be derived. Importantly, each stem cell type retains the defining properties and lineage restriction of their in vivo tissue of origin. Recently, we demonstrated that XEN-like cells arise within mESC cultures. This raises the possibility that mESCs can generate self-renewing XEN cells without the requirement for gene manipulation. We have developed a novel approach to convert mESCs to XEN cells (cXEN) using growth factors. We confirm that the down-regulation of the pluripotency transcription factor Nanog and the expression of primitive endoderm-associated genes Gata6, Gata4, Sox17 and Pdgfra are necessary for cXEN cell derivation. This approach highlights an important function for Fgf4 in cXEN cell derivation. Paracrine FGF-signalling compensates for the loss of endogenous Fgf4, which is necessary to exit mESC self-renewal, but not for XEN cell maintenance. Our cXEN protocol also reveals that distinct pluripotent stem cells respond uniquely to differentiation promoting signals. cXEN cells can be derived from mESCs cultured with Erk- and Gsk3-inhibitors (2i) and LIF, similarly to conventional mESCs. However, we find that epiblast stem cells (EpiSCs) derived from the post-implantation embryo are refractory to cXEN cell establishment, consistent with the hypothesis that EpiSCs represent a pluripotent state distinct from mESCs. In all, these findings suggest that the potential of mESCs includes the capacity to give rise to both extra-embryonic and embryonic lineages.
 
Overall design A total of eight samples were analyzed. Three mouse embryonic stem cell (mESC) lines were used as a negative control, 2 embryo-derived extraembryonic endoderm (XEN) cell lines were used as a positive control, 3 converted XEN (cXEN) cells were used as the experiemental cell lines.
 
Contributor(s) Niakan KK, Tsai IJ, Cho LT
Citation(s) 22791892
Submission date Jun 05, 2012
Last update date Jan 16, 2019
Contact name Isheng Jason Tsai
E-mail(s) [email protected]
Organization name Wellcome Trust Sanger Institute
Lab Parasite Genomics
Street address Wellcome Trust Genome Campus
City Hinxton
ZIP/Postal code CB10 1SA
Country United Kingdom
 
Platforms (1)
GPL6887 Illumina MouseWG-6 v2.0 expression beadchip
Samples (8)
GSM942978 mESC1
GSM942979 mESC2
GSM942980 mESC3
Relations
BioProject PRJNA168031

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE38477_RAW.tar 15.8 Mb (http)(custom) TAR
GSE38477_non-normalized_data.txt.gz 12.4 Mb (ftp)(http) TXT
GSE38477_normalized_data_and_annotations.txt.gz 12.8 Mb (ftp)(http) TXT
Processed data included within Sample table
Processed data are available on Series record

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