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GEO accession:
Series GSE47220
Query DataSets for GSE47220
Status
Public on May 30, 2013
Title
ETS factors reprogram the androgen receptor cistrome and prime prostate tumorigenesis in response to PTEN loss
Organisms
Homo sapiens
;
Mus musculus
Experiment type
Expression profiling by array
Genome binding/occupancy profiling by high throughput sequencing
Summary
This SuperSeries is composed of the SubSeries listed below.
Overall design
Refer to individual Series
Citation(s)
23817021
Submission date
May 23, 2013
Last update date
May 15, 2019
Contact name
Yu Chen
E-mail(s)
[email protected]
Phone
646-888-3356
Organization name
Memorial Sloan Kettering Cancer Center
Department
Human Oncology and Pathogenesis Program
Lab
Chen
Street address
1275 York Ave, Box 20
City
New York
State/province
NY
ZIP/Postal code
10065
Country
USA
Platforms (6)
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GPL6885
Illumina MouseRef-8 v2.0 expression beadchip
GPL6887
Illumina MouseWG-6 v2.0 expression beadchip
GPL6947
Illumina HumanHT-12 V3.0 expression beadchip
GPL10999
Illumina Genome Analyzer IIx (Homo sapiens)
GPL11002
Illumina Genome Analyzer IIx (Mus musculus)
GPL13112
Illumina HiSeq 2000 (Mus musculus)
Samples (56)
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GSM1128665
shScr Replicate 1
GSM1128666
shScr Replicate 2
GSM1128667
shScr Replicate 3
GSM1128668
ETV1sh1 Replicate 1
GSM1128669
ETV1sh1 Replicate 2
GSM1128670
ETV1sh1 Replicate 3
GSM1128671
ETV1sh2 Replicate 1
GSM1128672
ETV1sh2 Replicate 2
GSM1128673
ETV1sh2 Replicate 3
GSM1129152
Pten f/f prostate Castrate Rep1
GSM1129153
Pten f/f prostate Castrate Rep2
GSM1129154
Pten f/f prostate Intact Rep1
GSM1129155
Pten f/f prostate Intact Rep2
GSM1129156
Pten f/f ;ERG prostate Castrate Rep1
GSM1129157
Pten f/f ;ERG prostate Castrate Rep2
GSM1129158
Pten f/f ;ERG prostate Intact Rep1
GSM1129159
Pten f/f ;ERG prostate Intact Rep2
GSM1138514
WT (Pb-Cre neg;R26-ERG/ERG) Rep1
GSM1138515
WT (Pb-Cre neg;R26-ERG/ERG) Rep2
GSM1138516
WT (Pb-Cre neg;R26-ERG/ERG) Rep3
GSM1138517
ERG (Pb-Cre Pos;R26-ERG/ERG) Rep1
GSM1138518
ERG (Pb-Cre Pos;R26-ERG/ERG) Rep2
GSM1138519
ERG (Pb-Cre Pos;R26-ERG/ERG) Rep3
GSM1138520
Pten f/f (Pb-Cre Pos;Pten f/f) Rep1
GSM1138521
Pten f/f (Pb-Cre Pos;Pten f/f) Rep2
GSM1138522
Pten f/f (Pb-Cre Pos;Pten f/f) Rep3
GSM1138523
Pten f/f (Pb-Cre Pos;Pten f/f) Rep4
GSM1138524
Pten f/f;ERG (Pb-Cre Pos;Pten f/f;R26-ERG/ERG) Rep1
GSM1138525
Pten f/f;ERG (Pb-Cre Pos;Pten f/f;R26-ERG/ERG) Rep2
GSM1138526
Pten f/f;ERG (Pb-Cre Pos;Pten f/f;R26-ERG/ERG) Rep3
GSM1138527
Pten f/f;ERG (Pb-Cre Pos;Pten f/f;R26-ERG/ERG) Rep4
GSM1145302
Mouse_ERG_AR_IP
GSM1145303
Mouse_ERG_ERG_IP
GSM1145304
Mouse_ERG_H3K4me1_IP
GSM1145305
Mouse_ERG_H3K4me3_IP
GSM1145306
Mouse_ERG_input_IP
GSM1145307
Mouse_PTEN-ERG_AR_IP
GSM1145308
Mouse_PTEN-ERG_ERG_IP
GSM1145309
Mouse_PTEN-ERG_H3K4me1_IP
GSM1145310
Mouse_PTEN-ERG_H3K4me3_IP
GSM1145311
Mouse_PTEN-ERG_input_IP
GSM1145312
Mouse_PTEN_AR_IP
GSM1145313
Mouse_PTEN_ERG_IP
GSM1145314
Mouse_PTEN_H3K4me1_IP
GSM1145315
Mouse_PTEN_H3K4me3_IP
GSM1145316
Mouse_PTEN_input_IP
GSM1145317
Mouse_WT_AR_IP
GSM1145318
Mouse_WT_ERG_IP
GSM1145319
Mouse_WT_H3K4me1_IP
GSM1145320
Mouse_WT_H3K4me3_IP
GSM1145321
Mouse_WT_input_IP
GSM1145322
LNCaP-ETV1ChIP
GSM1145323
LNCaP-H3K4me1 ChIP
GSM1145324
LNCaP-shScr-AR ChIP
GSM1145325
LNCaP-ETV1sh2-AR ChIP
GSM1145326
LNCaP Input
This SuperSeries is composed of the following SubSeries:
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GSE46329
Gene expression profile of ETV1 knockdown in LNCaP prostate cancer cells
GSE46360
Response to catration in PTEN null and PTEN null ERG expressing mouse prostates
GSE46799
Expression profile of Pten loss and ERG overexpression in mouse prostate
GSE47119
Genomic mapping of ERG, AR, histone H3 monomethyl-K4, histone H3 trimethyl-K4 binding sites in mouse prostates in WT, ERG overexpression, Pten loss mouse prostates
GSE47120
Effect of ETV1 knockdown on genome wide AR binding in LNCaP Cells
Relations
BioProject
PRJNA205157
Download family
Format
SOFT formatted family file(s)
SOFT
MINiML formatted family file(s)
MINiML
Series Matrix File(s)
TXT
Supplementary file
Size
Download
File type/resource
GSE47220_RAW.tar
33.4 Mb
(http)
(custom)
TAR (of BED)
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