NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Series GSE54861 Query DataSets for GSE54861
Status Public on Dec 31, 2015
Title Gene expression profilings of normal human oral keratinocyte (HOK) and dysplastic oral keratinocyte cell line from a heavy smoker (DOK)
Organism Homo sapiens
Experiment type Expression profiling by array
Summary In our previous study, we identified global genetic and epigenetic aberrations in the tumors of oral squamous cell carcinoma (OSCC) patients who were habitual smokers. We hypothesized that cigarette smoke might play a role in oral malignant transformation. DOK cell line is a dysplasitc oral keratinocyte derived from a heavy smoker with OSCC. The differentially expressed genes between DOK and normal human oral keratinocytes (HOK) may provide important information about OSCC carcinogenesis mediated by cigarette smoking.
 
Overall design Total RNA was collected from DOK and HOK cells followed by gene expression microarray analysis.
 
Contributor(s) Lee C, Lin P
Citation(s) 26317789
Submission date Feb 10, 2014
Last update date Jul 26, 2019
Contact name Chia Huei Lee
E-mail(s) [email protected]
Organization name Taiwan National Health Research Institute
Department National Institute of Cancer Research
Street address 35, Keyan Rd.
City Zhunan Miaoli County
ZIP/Postal code 114
Country Taiwan
 
Platforms (1)
GPL10558 Illumina HumanHT-12 V4.0 expression beadchip
Samples (4)
GSM1325302 HOK(1)
GSM1325303 HOK(2)
GSM1325304 DOK(1)
Relations
BioProject PRJNA237894

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE54861_RAW.tar 26.2 Mb (http)(custom) TAR
GSE54861_non-normalized.txt.gz 1.3 Mb (ftp)(http) TXT
Processed data included within Sample table

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap