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Series GSE56799 Query DataSets for GSE56799
Status Public on Nov 12, 2014
Title Chromosome constitution in embryos generated after in vitro maturation in a culture system supplemented with cAMP modulators
Organism Homo sapiens
Experiment type Genome variation profiling by genome tiling array
Summary Ten volunteers underwent 13 research IVM cycles. Immature oocytes were retrieved after mild ovarian stimulation with gonadotropins but no hCG ovulation trigger, in vitro matured and fertilized using ICSI. Oocyte maturation rate in vitro was 47% (94/199), the mean fertilization rate was 71% (67/94) and 37% (25/67) of mature oocytes developed into a morphologically good quality embryo on day 3 after ICSI, after which the blastomeres were analysed by single-cell aCGH. Sixty-seven of the 111 blastomeres analysed showed at least one chromosomal abnormality. Two out of seventeen embryos had only normal cells while one embryo carried a meiotic abnormality, 11 were mosaic and three were chaotic. Although the number of embryos tested as well as the data available in the literature are too small to allow any statistical analysis, these data are comparable to the few data available on the total chromosome complement of day 3 ICSI embryos. This would indicate that other mechanisms than chromosomal abnormalities explain the low efficiency and high miscarriage rate in IVM cycles.
 
Overall design Between July 2012 and December 2012, 13 research IVM cycles were performed in 10 healthy egg donors. Eighteen embryos developed to the eight-cell stage and their blastomeres were analysed using array comparative genomic hybridization (aCGH).
 
Contributor(s) Spits C, Guzman L, Mertzanidou A, Jacobs K, Ortega-Hrepich C, De Vos M, Sermon K, Smitz J
Citation(s) 25475586
Submission date Apr 15, 2014
Last update date Jan 08, 2015
Contact name Kurt Jacobs
E-mail(s) [email protected]
Organization name Vrije Universiteit Brussel (VUB)
Department Faculty of Medicine and Pharmacy
Lab Research Group Reproduction and Genetics
Street address Laarbeeklaan 103
City Brussels
ZIP/Postal code 1090
Country Belgium
 
Platforms (1)
GPL17760 BlueGnome/Illumina 24sure v3.0
Samples (123)
GSM1369243 Embryo 1.1
GSM1369244 Embryo 1.2
GSM1369245 Embryo 1.3
Relations
BioProject PRJNA244628

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE56799_RAW.tar 71.9 Mb (http)(custom) TAR (of TXT)
Processed data included within Sample table
Processed data provided as supplementary file

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