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Series GSE6613 Query DataSets for GSE6613
Status Public on Dec 30, 2006
Title Parkinson's disease vs. controls, whole blood
Organism Homo sapiens
Experiment type Expression profiling by array
Summary Parkinson’s disease (PD) progresses relentlessly and affects five million people worldwide. Laboratory tests for PD are critically needed for developing treatments designed to slow or prevent progression of the disease. We performed a transcriptome-wide scan in 105 individuals to interrogate the molecular processes perturbed in cellular blood of patients with early-stage PD. The molecular marker here identified is strongly associated with risk of PD in 66 samples of the training set (third tertile cross-validated odds ratio of 5.7 {P for trend 0.005}). It is further validated in 39 independent test samples (third tertile odds ratio of 5.1 {P for trend 0.04}). The genes differentially expressed in patients with PD, or Alzheimer’s or progressive supranuclear palsy offer unique insights into disease-linked processes detectable in peripheral blood. Combining gene expression scans in blood and linked clinical data will facilitate the rapid characterization of candidate biomarkers as demonstrated here with respect to PD.
Keywords: disease state analysis
 
Overall design Whole blood expression data from 50 patients with Parkinson's disease, 33 with neurodegenerative diseases other than PD, and 23 healthy controls.
 
Contributor(s) Scherzer CR
Citation(s) 17215369, 18669654
Submission date Dec 26, 2006
Last update date Jun 07, 2019
Contact name Aron C Eklund
Organization name Technical University of Denmark
Department Center for Biological Sequence Analysis
Street address Kemitorvet, Building 208
City Lyngby
ZIP/Postal code 2800
Country Denmark
 
Platforms (1)
GPL96 [HG-U133A] Affymetrix Human Genome U133A Array
Samples (105)
GSM153404 Parkinson's disease sample x001
GSM153405 healthy control sample x004
GSM153406 healthy control sample x005
Relations
BioProject PRJNA98879

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE6613_RAW.tar 332.9 Mb (http)(custom) TAR (of CEL)

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