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Series GSE8113 Query DataSets for GSE8113
Status Public on Jun 14, 2007
Title Pooh cells
Organism Homo sapiens
Experiment type Expression profiling by array
Summary POU5F1 (more commonly known as Oct-4/3) is one of the stem cell markers and affects direction of differentiation in embryonic stem cells. To investigate whether cells of mesenchymal origin acquire embryonic phenotype, we generated a human cell line of mesodermal origin with overexpression of the chimeric POU5F1 gene with physiological co-activator EWS, which is driven by the potent EWS promoter by translocation. The cell line termed Pooh (POU5F1/Oct-4/3 overexpressing human) cells expressed embryonic stem cell genes such as Nanog and also non-translocated POU5F1, lost mesenchymal phenotypes, and exhibited embryonal stem cell-like alveolar structure when implanted into the subcutaneous tissue of immunodeficient mice. Hierarchical analysis by microchip analysis and cell surface analysis revealed that Pooh cells are subcategorized into the group of human embryonic stem cells and embryonal carcinoma cells. These results imply that cells of mesenchymal origin can partially be traced back to cells to embryonic phenotype by the POU5F1 gene in collaboration with the potent cis-regulatory element and the fused co-activator.
Keywords: Involvement of chimeric POU5F1 (Oct-4/3) with physiological co-activator EWS in mesenchymal-embryonic transition of human cells
 
Overall design Pooh cells was generated from primary or first passage cells of pelvic tumor (Yamaguchi et al., Genes Chromosomes Cancer. 2005 Jun;43(2):217-22), and cultured in tissue culture dishes (100 mm, Becton Dickinson) in the G031101 medium (Med Shirotori, Tokyo). All cultures were maintained at 37°C in a humidified atmosphere containing 95% air and 5% CO2.
 
Contributor(s) Makino H, Umezawa A
Citation(s) 19559696
Submission date Jun 13, 2007
Last update date Aug 10, 2018
Contact name Akihiro Umezawa
E-mail(s) [email protected]
Phone 81-3-5494-7047
Organization name National Center for Child Health and Development
Department Center for Regenerative Medicine
Street address 2-10-1 Okura
City Setagaya-ku
State/province Tokyo
ZIP/Postal code 157-8535
Country Japan
 
Platforms (1)
GPL96 [HG-U133A] Affymetrix Human Genome U133A Array
Samples (9)
GSM201137 POU5F1/Oct-4/3 overexpressing human cell
GSM201138 5-azacytidine-treatd POU5F1/Oct-4/3 overexpressing human cell
GSM201139 Human yolk sac tumor
Relations
BioProject PRJNA100983

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE8113_RAW.tar 34.4 Mb (http)(custom) TAR (of CEL, EXP)
Processed data included within Sample table

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