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Series GSE96861 Query DataSets for GSE96861
Status Public on Mar 22, 2017
Title Transcriptome analysis of Streptococcus gallolyticus subsp. gallolyticus in interaction with THP-1 macrophages [UCN 34 0h]
Organism Streptococcus gallolyticus subsp. gallolyticus
Experiment type Expression profiling by array
Summary Background: Streptococcus gallolyticus subsp. gallolyticus (S. gallolyticus) is a pathogen of infective endocarditis. It was observed previously that this bacterium survives longer in macrophages than other species and the phagocytic uptake by and survival in THP-1 macrophages is strain-dependent. Methods: The phagocytosis assay was performed with THP-1 macrophages. S. gallolyticus specific whole genome microarrays were used for transcriptome analysis. Results: Better survival in macrophages was observed for UCN34, BAA-2069 and ATCC43143 than for DSM16831 and LMG17956. S. gallolyticus strains show high resistance to tested bactericidal agents (acid, lysozyme and hydrogen peroxide). S. gallolyticus stimulates significant lower cytokine gene expression and causes less lysis of macrophages compared to the control strain S. aureus. S. gallolyticus reacts to oxidative burst with a higher gene expression of NADH oxidase initially at the early phase. Expression of genes involved in D-alanylation of teichoic acid, carbohydrate metabolism and transport systems were upregulated thereafter. Conclusion: S. gallolyticus is very resistant to bactericidal agents normally causing degradation of bacteria in phagolysosomes. Additionally, the D-alanylation of teichoic acid is an important factor for survival.
 
Overall design Analysis of two S. gallolyticus subsp. gallolyticus strains (BAA-2069 and UCN 34) at three different time points (-60min; 0h and 5h) of phagocytosis. For each time point and strain three biological replicates were taken and normalized on the -60min-timepoint.
 
Contributor(s) Grimm I, Vollmer T, Dreier J
Citation(s) 28672015
Submission date Mar 21, 2017
Last update date Jul 01, 2019
Contact name Imke Grimm
E-mail(s) [email protected]
Organization name Herz- und Diabeteszentrum NRW; Universitätsklinikum der Ruhr-Universität Bochum
Department Institut für Laboratoriums- und Transfusionsmedizin
Street address Georgstraße 11
City Bad Oeynhausen
ZIP/Postal code 32545
Country Germany
 
Platforms (1)
GPL23196 Agilent-072445 ArrayXS_S.gallolyticus_01-2015 [gene version]
Samples (6)
GSM2545273 UCN34 -60min a1 M1 - 159 A1
GSM2545274 UCN34 0h a2 M1 - 159 A2
GSM2545275 UCN34 -60min c2 M1 - 159 B1
This SubSeries is part of SuperSeries:
GSE96865 Transcriptome analysis of Streptococcus gallolyticus subsp. gallolyticus in interaction with THP-1 macrophages
Relations
BioProject PRJNA379954

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE96861_RAW.tar 5.7 Mb (http)(custom) TAR (of TXT)
Processed data included within Sample table

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