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Sample GSM100469 Query DataSets for GSM100469
Status Public on Jun 07, 2006
Title MPI-017
Sample type RNA
 
Source name Frozen tissue
Organism Homo sapiens
Characteristics sample.ID : MPI-017
Relapse: no
Age : 40
Sex : male
Morphologic.diagnosis : BL
CD20.expr. : present
CD10.expr. : present
bcl2.expr. : absent
Ki.67.score : 99
CD5.expr. : absent
bcl6.expr. : present
MYC.Partner : IG-MYC
BCL6.Break : absent
IGH.BCL2.Fusion : absent
Chromosomal.Complexity.Score : 0
Genetic.Group : MYC.simple
AnnArbor.Stage : IV
Lesions : nodal + extranodal
B.Symptoms : absent
Survival.Status : dead
FollowupTime..months. : 0.5
Radiotherapy : no
RITUXIMAB : no
Response.to.treatment : NA
Chemotherapy : ALL-like
Molecular.Diagnosis : mBL
GCB.ABC.signature : GCB
Training.Test : Training
core.BL : yes
BL.probability : 1
Extracted molecule total RNA
Label Biotin
 
Description Mature aggressive B-cell lymphoma
Data processing Probe level normalization was done using the calibration and variance stabilization method by Huber et al. (Bioinformatics 2002, PMID: 12169536). Probe-set summarization was performed using the median polish method on the normalized data (Irrizary et al. Nucleic Acids Research 2003, PMID: 12582260).
 
Submission date Mar 15, 2006
Last update date Jun 07, 2006
Contact name Michael Hummel
Organization name Universitätsmedizin Berlin, Campus Benjamin Franklin
Department Institute of Pathology
Street address Hindenburgdamm 30
City Berlin
ZIP/Postal code 12200
Country Germany
 
Platform ID GPL96
Series (1)
GSE4475 A Biologic Definition of Burkitt's Lymphoma from Transcriptional and Genomic Profiling

Data table header descriptions
ID_REF
VALUE Normalized and summarized probeset expression value on additive arcsin (log-like) scale

Data table
ID_REF VALUE
1007_s_at 9.26023104655998
1053_at 8.93897415254474
117_at 7.83306568742598
121_at 9.9939953745535
1255_g_at 6.29687060857857
1294_at 7.97518451862095
1316_at 7.36095758619631
1320_at 7.02208798011053
1405_i_at 7.96162491858
1431_at 6.19787179658599
1438_at 7.95122777350488
1487_at 8.62042159601326
1494_f_at 8.11779907438243
1598_g_at 9.65952616534284
160020_at 8.95028097868344
1729_at 8.3518633936528
1773_at 7.34802070638554
177_at 7.33784779587235
179_at 9.99149039667277
1861_at 7.4646978415971

Total number of rows: 22283

Table truncated, full table size 604 Kbytes.




Supplementary file Size Download File type/resource
GSM100469.CEL.gz 3.4 Mb (ftp)(http) CEL

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