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Sample GSM100489 Query DataSets for GSM100489
Status Public on Jun 07, 2006
Title MPI-041
Sample type RNA
 
Source name Frozen tissue
Organism Homo sapiens
Characteristics sample.ID : MPI-041
Relapse: no
Age : 49
Sex : male
Morphologic.diagnosis : aggressive B-NHL.unclassifiable
CD20.expr. : present
CD10.expr. : absent
bcl2.expr. : present
Ki.67.score : 80
CD5.expr. : NA
bcl6.expr. : absent
MYC.Partner : MYC-negative
BCL6.Break : absent
IGH.BCL2.Fusion : absent
Chromosomal.Complexity.Score : NA
Genetic.Group : MYC.neg
AnnArbor.Stage : I
Lesions : nodal
B.Symptoms : NA
Survival.Status : alive
FollowupTime..months. : 35.5
Radiotherapy : yes
RITUXIMAB : yes
Response.to.treatment : CRu
Chemotherapy : CHOP-like
Molecular.Diagnosis : intermediate
GCB.ABC.signature : GCB
Training.Test : Test
core.BL : no
BL.probability : 0.24
Extracted molecule total RNA
Label Biotin
 
Description Mature aggressive B-cell lymphoma
Data processing Probe level normalization was done using the calibration and variance stabilization method by Huber et al. (Bioinformatics 2002, PMID: 12169536). Probe-set summarization was performed using the median polish method on the normalized data (Irrizary et al. Nucleic Acids Research 2003, PMID: 12582260).
 
Submission date Mar 15, 2006
Last update date Jun 28, 2010
Contact name Michael Hummel
Organization name Universitätsmedizin Berlin, Campus Benjamin Franklin
Department Institute of Pathology
Street address Hindenburgdamm 30
City Berlin
ZIP/Postal code 12200
Country Germany
 
Platform ID GPL96
Series (1)
GSE4475 A Biologic Definition of Burkitt's Lymphoma from Transcriptional and Genomic Profiling
Relations
Affiliated with GSE22470

Data table header descriptions
ID_REF
VALUE Normalized and summarized probeset expression value on additive arcsin (log-like) scale

Data table
ID_REF VALUE
1007_s_at 9.24805948234301
1053_at 7.54608678899744
117_at 7.51581333928094
121_at 10.3237561114126
1255_g_at 6.844195303163
1294_at 8.08276746974738
1316_at 7.37228535976467
1320_at 7.02419598115696
1405_i_at 8.93399602235925
1431_at 6.14149146388401
1438_at 7.96091948446804
1487_at 7.792399110551
1494_f_at 8.08938434441784
1598_g_at 9.57974460822647
160020_at 9.0796068396936
1729_at 8.09633769580783
1773_at 7.3105531149124
177_at 7.46982668864394
179_at 9.32896028449493
1861_at 6.88419839318881

Total number of rows: 22283

Table truncated, full table size 604 Kbytes.




Supplementary file Size Download File type/resource
GSM100489.CEL.gz 3.4 Mb (ftp)(http) CEL

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