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Sample GSM100502 Query DataSets for GSM100502
Status Public on Jun 07, 2006
Title MPI-060
Sample type RNA
 
Source name Frozen tissue
Organism Homo sapiens
Characteristics sample.ID : MPI-060
Relapse: no
Age : 49
Sex : male
Morphologic.diagnosis : DLBCL
CD20.expr. : absent
CD10.expr. : present
bcl2.expr. : absent
Ki.67.score : 85
CD5.expr. : NA
bcl6.expr. : absent
MYC.Partner : IG-MYC
BCL6.Break : absent
IGH.BCL2.Fusion : absent
Chromosomal.Complexity.Score : 1
Genetic.Group : MYC.simple
AnnArbor.Stage : III
Lesions : nodal + extranodal
B.Symptoms : absent
Survival.Status : dead
FollowupTime..months. : 3.1
Radiotherapy : no
RITUXIMAB : no
Response.to.treatment : PR
Chemotherapy : CHOP-like
Molecular.Diagnosis : intermediate
GCB.ABC.signature : GCB
Training.Test : Training
core.BL : no
BL.probability : 0.43
Extracted molecule total RNA
Label Biotin
 
Description Mature aggressive B-cell lymphoma
Data processing Probe level normalization was done using the calibration and variance stabilization method by Huber et al. (Bioinformatics 2002, PMID: 12169536). Probe-set summarization was performed using the median polish method on the normalized data (Irrizary et al. Nucleic Acids Research 2003, PMID: 12582260).
 
Submission date Mar 15, 2006
Last update date Feb 07, 2013
Contact name Michael Hummel
Organization name Universitätsmedizin Berlin, Campus Benjamin Franklin
Department Institute of Pathology
Street address Hindenburgdamm 30
City Berlin
ZIP/Postal code 12200
Country Germany
 
Platform ID GPL96
Series (1)
GSE4475 A Biologic Definition of Burkitt's Lymphoma from Transcriptional and Genomic Profiling
Relations
Reanalyzed by GSE44164

Data table header descriptions
ID_REF
VALUE Normalized and summarized probeset expression value on additive arcsin (log-like) scale

Data table
ID_REF VALUE
1007_s_at 8.55330257410002
1053_at 8.49653287287527
117_at 7.89057739050266
121_at 9.61545337781376
1255_g_at 6.20248374618976
1294_at 8.24000397678845
1316_at 7.07622589769516
1320_at 6.9872566210591
1405_i_at 9.91328469313861
1431_at 6.34673337622599
1438_at 7.92377956609024
1487_at 8.72193481517489
1494_f_at 7.78826444723529
1598_g_at 11.5265169058754
160020_at 8.7877793643073
1729_at 8.68415304532095
1773_at 7.5092872051952
177_at 7.33236862922166
179_at 9.77360268907484
1861_at 7.73538457136347

Total number of rows: 22283

Table truncated, full table size 604 Kbytes.




Supplementary file Size Download File type/resource
GSM100502.CEL.gz 3.4 Mb (ftp)(http) CEL

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