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Sample GSM100527 Query DataSets for GSM100527
Status Public on Jun 07, 2006
Title MPI-088
Sample type RNA
 
Source name Frozen tissue
Organism Homo sapiens
Characteristics sample.ID : MPI-088
Relapse: unk
Age : 67
Sex : NA
Morphologic.diagnosis : aggressive B-NHL.unclassifiable
CD20.expr. : present
CD10.expr. : absent
bcl2.expr. : present
Ki.67.score : 60
CD5.expr. : absent
bcl6.expr. : present
MYC.Partner : MYC-negative
BCL6.Break : absent
IGH.BCL2.Fusion : absent
Chromosomal.Complexity.Score : 9
Genetic.Group : MYC.neg
AnnArbor.Stage : NA
Lesions : NA
B.Symptoms : NA
Survival.Status : NA
FollowupTime..months. : NA
Radiotherapy : NA
RITUXIMAB : NA
Response.to.treatment : NA
Chemotherapy : NA
Molecular.Diagnosis : non-mBL
GCB.ABC.signature : ABC
Training.Test : Training
core.BL : no
BL.probability : 0.01
Extracted molecule total RNA
Label Biotin
 
Description Mature aggressive B-cell lymphoma
Data processing Probe level normalization was done using the calibration and variance stabilization method by Huber et al. (Bioinformatics 2002, PMID: 12169536). Probe-set summarization was performed using the median polish method on the normalized data (Irrizary et al. Nucleic Acids Research 2003, PMID: 12582260).
 
Submission date Mar 15, 2006
Last update date Jun 28, 2010
Contact name Michael Hummel
Organization name Universitätsmedizin Berlin, Campus Benjamin Franklin
Department Institute of Pathology
Street address Hindenburgdamm 30
City Berlin
ZIP/Postal code 12200
Country Germany
 
Platform ID GPL96
Series (1)
GSE4475 A Biologic Definition of Burkitt's Lymphoma from Transcriptional and Genomic Profiling
Relations
Affiliated with GSE22470

Data table header descriptions
ID_REF
VALUE Normalized and summarized probeset expression value on additive arcsin (log-like) scale

Data table
ID_REF VALUE
1007_s_at 8.97544398653054
1053_at 8.68946235205586
117_at 7.57084816985627
121_at 9.99367350059016
1255_g_at 7.85292662796492
1294_at 8.06348978499695
1316_at 7.33260697644842
1320_at 7.01524648439807
1405_i_at 8.73237237713581
1431_at 6.19637116136186
1438_at 8.05637415205396
1487_at 8.39093391437501
1494_f_at 7.90478215745973
1598_g_at 9.47525732216147
160020_at 8.92694726925692
1729_at 8.83252604117627
1773_at 7.54040993909534
177_at 7.46274711234623
179_at 9.88193875196072
1861_at 7.61669381484351

Total number of rows: 22283

Table truncated, full table size 604 Kbytes.




Supplementary file Size Download File type/resource
GSM100527.CEL.gz 3.6 Mb (ftp)(http) CEL

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