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Sample GSM100534 Query DataSets for GSM100534
Status Public on Jun 07, 2006
Title MPI-095
Sample type RNA
 
Source name Frozen tissue
Organism Homo sapiens
Characteristics sample.ID : MPI-095
Relapse: no
Age : 5
Sex : male
Morphologic.diagnosis : BL
CD20.expr. : present
CD10.expr. : present
bcl2.expr. : absent
Ki.67.score : 99
CD5.expr. : absent
bcl6.expr. : present
MYC.Partner : IG-MYC
BCL6.Break : absent
IGH.BCL2.Fusion : absent
Chromosomal.Complexity.Score : 11
Genetic.Group : MYC.complex
AnnArbor.Stage : II
Lesions : nodal
B.Symptoms : absent
Survival.Status : alive
FollowupTime..months. : 49
Radiotherapy : no
RITUXIMAB : no
Response.to.treatment : CR
Chemotherapy : ALL-like
Molecular.Diagnosis : mBL
GCB.ABC.signature : GCB
Training.Test : Training
core.BL : yes
BL.probability : 1
Extracted molecule total RNA
Label Biotin
 
Description Mature aggressive B-cell lymphoma
Data processing Probe level normalization was done using the calibration and variance stabilization method by Huber et al. (Bioinformatics 2002, PMID: 12169536). Probe-set summarization was performed using the median polish method on the normalized data (Irrizary et al. Nucleic Acids Research 2003, PMID: 12582260).
 
Submission date Mar 15, 2006
Last update date Jun 07, 2006
Contact name Michael Hummel
Organization name Universitätsmedizin Berlin, Campus Benjamin Franklin
Department Institute of Pathology
Street address Hindenburgdamm 30
City Berlin
ZIP/Postal code 12200
Country Germany
 
Platform ID GPL96
Series (1)
GSE4475 A Biologic Definition of Burkitt's Lymphoma from Transcriptional and Genomic Profiling

Data table header descriptions
ID_REF
VALUE Normalized and summarized probeset expression value on additive arcsin (log-like) scale

Data table
ID_REF VALUE
1007_s_at 9.0182621418481
1053_at 8.90957369412833
117_at 7.66764827127078
121_at 9.9461000727034
1255_g_at 6.49098396647322
1294_at 8.09216133225453
1316_at 7.5348998217333
1320_at 6.95375010054641
1405_i_at 7.91279677844706
1431_at 6.18460142075927
1438_at 7.93196133205507
1487_at 8.28219472664756
1494_f_at 7.99306090560612
1598_g_at 9.39089834182044
160020_at 8.90364443218555
1729_at 8.45219076629632
1773_at 7.48413872537867
177_at 7.31324553273254
179_at 9.97262224449368
1861_at 7.91441901252799

Total number of rows: 22283

Table truncated, full table size 604 Kbytes.




Supplementary file Size Download File type/resource
GSM100534.CEL.gz 3.5 Mb (ftp)(http) CEL

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