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Sample GSM100543 Query DataSets for GSM100543
Status Public on Jun 07, 2006
Title MPI-107
Sample type RNA
 
Source name Frozen tissue
Organism Homo sapiens
Characteristics sample.ID : MPI-107
Relapse: unk
Age : 70
Sex : female
Morphologic.diagnosis : DLBCL
CD20.expr. : absent
CD10.expr. : absent
bcl2.expr. : present
Ki.67.score : 80
CD5.expr. : 5
bcl6.expr. : absent
MYC.Partner : MYC-negative
BCL6.Break : absent
IGH.BCL2.Fusion : absent
Chromosomal.Complexity.Score : 14
Genetic.Group : MYC.neg
AnnArbor.Stage : NA
Lesions : NA
B.Symptoms : NA
Survival.Status : alive
FollowupTime..months. : 209.3
Radiotherapy : NA
RITUXIMAB : NA
Response.to.treatment : NA
Chemotherapy : NA
Molecular.Diagnosis : intermediate
GCB.ABC.signature : unclassified
Training.Test : Training
core.BL : no
BL.probability : 0.09
Extracted molecule total RNA
Label Biotin
 
Description Mature aggressive B-cell lymphoma
Data processing Probe level normalization was done using the calibration and variance stabilization method by Huber et al. (Bioinformatics 2002, PMID: 12169536). Probe-set summarization was performed using the median polish method on the normalized data (Irrizary et al. Nucleic Acids Research 2003, PMID: 12582260).
 
Submission date Mar 15, 2006
Last update date Jun 28, 2010
Contact name Michael Hummel
Organization name Universitätsmedizin Berlin, Campus Benjamin Franklin
Department Institute of Pathology
Street address Hindenburgdamm 30
City Berlin
ZIP/Postal code 12200
Country Germany
 
Platform ID GPL96
Series (1)
GSE4475 A Biologic Definition of Burkitt's Lymphoma from Transcriptional and Genomic Profiling
Relations
Affiliated with GSE22470

Data table header descriptions
ID_REF
VALUE Normalized and summarized probeset expression value on additive arcsin (log-like) scale

Data table
ID_REF VALUE
1007_s_at 8.61875693220666
1053_at 8.71297332324092
117_at 7.96961052059513
121_at 9.6985916530132
1255_g_at 6.19685546335234
1294_at 8.11204006920266
1316_at 7.33005654963377
1320_at 6.95582187443998
1405_i_at 7.97090007902282
1431_at 6.02017275924518
1438_at 7.9785856000084
1487_at 8.46941261653486
1494_f_at 7.91812783395383
1598_g_at 9.46984983845159
160020_at 8.73010697263878
1729_at 8.7060091690738
1773_at 7.87879412621462
177_at 7.36062038202866
179_at 9.87948125933444
1861_at 7.82552660193193

Total number of rows: 22283

Table truncated, full table size 604 Kbytes.




Supplementary file Size Download File type/resource
GSM100543.CEL.gz 3.6 Mb (ftp)(http) CEL

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