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Sample GSM100578 Query DataSets for GSM100578
Status Public on Jun 07, 2006
Title MPI-144
Sample type RNA
 
Source name Frozen tissue
Organism Homo sapiens
Characteristics sample.ID : MPI-144
Relapse: unk
Age : 33
Sex : male
Morphologic.diagnosis : atypical BL
CD20.expr. : present
CD10.expr. : present
bcl2.expr. : absent
Ki.67.score : 90
CD5.expr. : 5
bcl6.expr. : present
MYC.Partner : IG-MYC
BCL6.Break : absent
IGH.BCL2.Fusion : absent
Chromosomal.Complexity.Score : NA
Genetic.Group : NA
AnnArbor.Stage : IV
Lesions : nodal + extranodal
B.Symptoms : NA
Survival.Status : alive
FollowupTime..months. : 142.4
Radiotherapy : NA
RITUXIMAB : NA
Response.to.treatment : NA
Chemotherapy : NA
Molecular.Diagnosis : mBL
GCB.ABC.signature : GCB
Training.Test : Training
core.BL : no
BL.probability : 1
Extracted molecule total RNA
Label Biotin
 
Description Mature aggressive B-cell lymphoma
Data processing Probe level normalization was done using the calibration and variance stabilization method by Huber et al. (Bioinformatics 2002, PMID: 12169536). Probe-set summarization was performed using the median polish method on the normalized data (Irrizary et al. Nucleic Acids Research 2003, PMID: 12582260).
 
Submission date Mar 15, 2006
Last update date Jun 07, 2006
Contact name Michael Hummel
Organization name Universitätsmedizin Berlin, Campus Benjamin Franklin
Department Institute of Pathology
Street address Hindenburgdamm 30
City Berlin
ZIP/Postal code 12200
Country Germany
 
Platform ID GPL96
Series (1)
GSE4475 A Biologic Definition of Burkitt's Lymphoma from Transcriptional and Genomic Profiling

Data table header descriptions
ID_REF
VALUE Normalized and summarized probeset expression value on additive arcsin (log-like) scale

Data table
ID_REF VALUE
1007_s_at 8.6622452834646
1053_at 8.51159808047669
117_at 7.84387768341317
121_at 9.54274980738535
1255_g_at 6.02236513277673
1294_at 8.34950619392515
1316_at 7.45251213950163
1320_at 6.86953870697551
1405_i_at 8.0234254060397
1431_at 6.26067525103518
1438_at 7.8719006404693
1487_at 8.38178290525617
1494_f_at 7.94874256923578
1598_g_at 9.28902152365028
160020_at 8.87031220092373
1729_at 8.61095870159026
1773_at 7.48546817844879
177_at 7.36321593002994
179_at 10.0456598343764
1861_at 7.5304104080353

Total number of rows: 22283

Table truncated, full table size 604 Kbytes.




Supplementary file Size Download File type/resource
GSM100578.CEL.gz 3.4 Mb (ftp)(http) CEL

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