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Sample GSM100603 Query DataSets for GSM100603
Status Public on Jun 07, 2006
Title MPI-173
Sample type RNA
 
Source name Frozen tissue
Organism Homo sapiens
Characteristics sample.ID : MPI-173
Relapse: unk
Age : 40
Sex : female
Morphologic.diagnosis : atypical BL
CD20.expr. : present
CD10.expr. : absent
bcl2.expr. : present
Ki.67.score : 70
CD5.expr. : absent
bcl6.expr. : present
MYC.Partner : MYC-negative
BCL6.Break : absent
IGH.BCL2.Fusion : absent
Chromosomal.Complexity.Score : 5
Genetic.Group : MYC.neg
AnnArbor.Stage : NA
Lesions : NA
B.Symptoms : NA
Survival.Status : NA
FollowupTime..months. : NA
Radiotherapy : NA
RITUXIMAB : NA
Response.to.treatment : NA
Chemotherapy : NA
Molecular.Diagnosis : non-mBL
GCB.ABC.signature : GCB
Training.Test : Training
core.BL : no
BL.probability : 0.01
Extracted molecule total RNA
Label Biotin
 
Description Mature aggressive B-cell lymphoma
Data processing Probe level normalization was done using the calibration and variance stabilization method by Huber et al. (Bioinformatics 2002, PMID: 12169536). Probe-set summarization was performed using the median polish method on the normalized data (Irrizary et al. Nucleic Acids Research 2003, PMID: 12582260).
 
Submission date Mar 15, 2006
Last update date Sep 18, 2017
Contact name Michael Hummel
Organization name Universitätsmedizin Berlin, Campus Benjamin Franklin
Department Institute of Pathology
Street address Hindenburgdamm 30
City Berlin
ZIP/Postal code 12200
Country Germany
 
Platform ID GPL96
Series (1)
GSE4475 A Biologic Definition of Burkitt's Lymphoma from Transcriptional and Genomic Profiling
Relations
Affiliated with GSE22470
Affiliated with GSE103944

Data table header descriptions
ID_REF
VALUE Normalized and summarized probeset expression value on additive arcsin (log-like) scale

Data table
ID_REF VALUE
1007_s_at 8.96932241725946
1053_at 8.47451803979165
117_at 7.89772894281259
121_at 9.81894489087937
1255_g_at 6.17484456327877
1294_at 8.7746233671221
1316_at 7.27748603603653
1320_at 6.87971313459426
1405_i_at 9.81097334584897
1431_at 6.16678185205452
1438_at 8.02031297318408
1487_at 8.55987154414025
1494_f_at 7.92252562601986
1598_g_at 9.88385162059163
160020_at 9.18856924419054
1729_at 8.91671657878045
1773_at 7.46928974575165
177_at 7.64565198631338
179_at 9.77652416283534
1861_at 7.88303440403587

Total number of rows: 22283

Table truncated, full table size 604 Kbytes.




Supplementary file Size Download File type/resource
GSM100603.CEL.gz 3.4 Mb (ftp)(http) CEL

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