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Sample GSM1020258 Query DataSets for GSM1020258
Status Public on Oct 17, 2012
Title PMN-MDSC RMA-S blood, repl. 3
Sample type RNA
 
Source name RMA-S mouse blood
Organism Mus musculus
Characteristics cell type: polymorphnuclear-MDSC from blood
treatment: RMA-S cell line
genetic background: C57BL/6
age: 9 wk
Extracted molecule total RNA
Extraction protocol RNA was extracted using Rneasy Mini Kit (Qiagen), followed by DNase I treatment (TURBO DNA-free kit, Ambion). Quality control was performed with Agilent Bioanalyser.
Label biotin
Label protocol Biotinylated cRNA were prepared with the Ambion MessageAmp kit for Illumina arrays
 
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol
Description replicate 3
Data processing The data were normalised using quantile normalisation
 
Submission date Oct 16, 2012
Last update date Oct 17, 2012
Contact name Christian Eisen
E-mail(s) [email protected]
Organization name German Cancer Research Center
Street address Im Neuenheimer Feld 280
City Heidelberg
ZIP/Postal code 69120
Country Germany
 
Platform ID GPL6105
Series (1)
GSE41620 Tumor-infiltrating monocytic myeloid-derived suppressor cells mediate CCR5-dependent recruitment of regulatory T cells favoring tumor growth

Data table header descriptions
ID_REF
VALUE quantile normalized
48_BT2minus.BEAD_STDERR
48_BT2minus.Detection Pval

Data table
ID_REF VALUE 48_BT2minus.BEAD_STDERR 48_BT2minus.Detection Pval
ILMN_2585309 147.3193 5.965883 0.008109794
ILMN_1248530 193.6388 9.196115 0.001871491
ILMN_2553736 205.7323 10.13643 0.001871491
ILMN_2545625 172.6341 7.664724 0.003119152
ILMN_1222893 250.9227 8.905506 0.00062383
ILMN_1213694 87.21484 5.230283 0.5421085
ILMN_1247666 84.10567 5.678654 0.6587648
ILMN_1256390 76.61996 5.622864 0.9238927
ILMN_1226048 78.562 4.263962 0.8771054
ILMN_1214578 556.9157 15.8688 0
ILMN_1233740 106.315 5.125081 0.1072988
ILMN_2466131 705.7427 16.91729 0
ILMN_1215002 88.93645 5.134432 0.4635059
ILMN_1227498 235.0881 9.089224 0.001247661
ILMN_1222816 79.32927 5.321202 0.856519
ILMN_1257151 77.80904 4.820782 0.8976918
ILMN_1236229 83.63732 4.558699 0.6824704
ILMN_1260532 92.40182 6.784315 0.3480973
ILMN_2440740 89.60503 5.612676 0.4429195
ILMN_2416388 89.6264 6.691896 0.4416719

Total number of rows: 46632

Table truncated, full table size 1827 Kbytes.




Supplementary file Size Download File type/resource
GSM1020258_48_BT2minus_1.csv.gz 151.0 Kb (ftp)(http) CSV
GSM1020258_48_BT2minus_2.csv.gz 133.2 Kb (ftp)(http) CSV
Processed data included within Sample table
Processed data are available on Series record

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