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Sample GSM1040228 Query DataSets for GSM1040228
Status Public on Dec 03, 2013
Title 2102EP4D3_hEC
Sample type RNA
 
Source name hEC
Organism Homo sapiens
Characteristics cell type: hEC
Extracted molecule total RNA
Extraction protocol Total RNA was isolated by Trizol reagent (Life Technologies) according to the manufacturer's instruction.
Label Cy3
Label protocol Agilent standard protocol
 
Hybridization protocol Agilent standard protocol
Scan protocol Agilent standard protocol
Data processing The data were analyzed using the Gene Spring GX 11.5.1 software program (Agilent Technologies).The data processing was performed as follows; (i) Threshold raw signals were set to 1.0, (ii) Log base 2 transformation was performed, (iii) 75th percentile normalization was chosen as the normalized algorithm.
 
Submission date Nov 21, 2012
Last update date Dec 03, 2013
Contact name Shinya Yamanaka
E-mail(s) [email protected]
Phone 81-75-366-7041
Organization name Center for iPS Cell Research and Applicaton (CiRA), Kyoto University
Street address 53 Kawahara-machi, Shogoin, Sakyo-ku
City Kyoto
ZIP/Postal code 606-8507
Country Japan
 
Platform ID GPL14550
Series (2)
GSE42445 Comparison of gene expression profilings between hESCs and hiPSCs
GSE49053 Differentiation defective phenotypes revealed by large scale analyses of human pluripotent stem cells

Data table header descriptions
ID_REF
VALUE Normalized signal intensity

Data table
ID_REF VALUE
GE_BrightCorner 6.8901653
DarkCorner -7.3024216
A_23_P326296 -0.8300152
A_24_P287941 1.1416597
A_24_P325046 -2.3853354
A_23_P200404 3.538249
A_19_P00800513 1.3446093
A_23_P15619 -0.029370308
A_33_P3402354 -3.5428944
A_33_P3338798 -7.3499823
A_32_P98683 -0.4691496
A_23_P137543 1.6499128
A_19_P00803040 0.082754135
A_23_P117852 -1.4018164
A_33_P3285585 -7.362918
A_24_P328231 -1.7606382
A_33_P3415668 -7.3691473
A_23_P73609 -7.3929434
A_24_P186124 0.7958565
A_23_P369983 0.32263088

Total number of rows: 42545

Table truncated, full table size 1001 Kbytes.




Supplementary file Size Download File type/resource
GSM1040228_2102EP4D3_12634_2_2.txt.gz 3.1 Mb (ftp)(http) TXT
Processed data included within Sample table

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