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Sample GSM1040241 Query DataSets for GSM1040241
Status Public on Dec 03, 2013
Title KhES5(p47)_undiff_hES
Sample type RNA
 
Source name undifferentiated hES
Organism Homo sapiens
Characteristics cell type: undiff_hES
cell origin: blastocyst
Extracted molecule total RNA
Extraction protocol Total RNA was isolated by Trizol reagent (Life Technologies) according to the manufacturer's instruction.
Label Cy3
Label protocol Agilent standard protocol
 
Hybridization protocol Agilent standard protocol
Scan protocol Agilent standard protocol
Data processing The data were analyzed using the Gene Spring GX 11.5.1 software program (Agilent Technologies).The data processing was performed as follows; (i) Threshold raw signals were set to 1.0, (ii) Log base 2 transformation was performed, (iii) 90th percentile normalization was chosen as the normalized algorithm.
 
Submission date Nov 21, 2012
Last update date Dec 03, 2013
Contact name Shinya Yamanaka
E-mail(s) [email protected]
Phone 81-75-366-7041
Organization name Center for iPS Cell Research and Applicaton (CiRA), Kyoto University
Street address 53 Kawahara-machi, Shogoin, Sakyo-ku
City Kyoto
ZIP/Postal code 606-8507
Country Japan
 
Platform ID GPL10850
Series (2)
GSE42446 Comparison of miRNA expression profilings between hESCs and hiPSCs
GSE49053 Differentiation defective phenotypes revealed by large scale analyses of human pluripotent stem cells

Data table header descriptions
ID_REF
VALUE Normalized signal intensity

Data table
ID_REF VALUE
DarkCorner -10.863259
NC1_00000197 -10.863259
NC1_00000215 -10.863259
NC2_00079215 -10.863259
NC2_00092197 -10.863259
NC2_00106057 -10.863259
NC2_00122731 -10.863259
NegativeControl -10.863259
SCorner3 4.5465727
bkv-miR-B1-3p -10.863259
bkv-miR-B1-5p -10.863259
ebv-miR-BART1-3p -10.863259
ebv-miR-BART1-5p -10.863259
ebv-miR-BART10 -10.863259
ebv-miR-BART10* -10.863259
ebv-miR-BART11-3p -10.863259
ebv-miR-BART11-5p -10.863259
ebv-miR-BART12 -5.630771
ebv-miR-BART13 -1.4387655
ebv-miR-BART13* -10.863259

Total number of rows: 949

Table truncated, full table size 22 Kbytes.




Supplementary file Size Download File type/resource
GSM1040241_4-KhES5_p47_14108_2_2.txt.gz 819.5 Kb (ftp)(http) TXT
Processed data included within Sample table

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