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Sample GSM1040301 Query DataSets for GSM1040301
Status Public on Dec 03, 2013
Title CB-1_soma
Sample type RNA
 
Source name Cord Blood cells
Organism Homo sapiens
Characteristics cell type: soma
Extracted molecule total RNA
Extraction protocol Total RNA was isolated by Trizol reagent (Life Technologies) according to the manufacturer's instruction.
Label Cy3
Label protocol Agilent standard protocol
 
Hybridization protocol Agilent standard protocol
Scan protocol Agilent standard protocol
Data processing The data were analyzed using the Gene Spring GX 11.5.1 software program (Agilent Technologies).The data processing was performed as follows; (i) Threshold raw signals were set to 1.0, (ii) Log base 2 transformation was performed, (iii) 90th percentile normalization was chosen as the normalized algorithm.
 
Submission date Nov 21, 2012
Last update date Dec 03, 2013
Contact name Shinya Yamanaka
E-mail(s) [email protected]
Phone 81-75-366-7041
Organization name Center for iPS Cell Research and Applicaton (CiRA), Kyoto University
Street address 53 Kawahara-machi, Shogoin, Sakyo-ku
City Kyoto
ZIP/Postal code 606-8507
Country Japan
 
Platform ID GPL10850
Series (2)
GSE42446 Comparison of miRNA expression profilings between hESCs and hiPSCs
GSE49053 Differentiation defective phenotypes revealed by large scale analyses of human pluripotent stem cells

Data table header descriptions
ID_REF
VALUE Normalized signal intensity

Data table
ID_REF VALUE
DarkCorner -10.013055
NC1_00000197 -10.013055
NC1_00000215 -10.013055
NC2_00079215 -10.013055
NC2_00092197 -10.013055
NC2_00106057 -10.013055
NC2_00122731 -10.013055
NegativeControl -10.013055
SCorner3 5.546937
bkv-miR-B1-3p -10.013055
bkv-miR-B1-5p -10.013055
ebv-miR-BART1-3p -10.013055
ebv-miR-BART1-5p -10.013055
ebv-miR-BART10 -10.013055
ebv-miR-BART10* -10.013055
ebv-miR-BART11-3p -10.013055
ebv-miR-BART11-5p -10.013055
ebv-miR-BART12 -3.8990524
ebv-miR-BART13 -1.6402583
ebv-miR-BART13* -10.013055

Total number of rows: 949

Table truncated, full table size 22 Kbytes.




Supplementary file Size Download File type/resource
GSM1040301_CB-1_14301_2_3.txt.gz 870.5 Kb (ftp)(http) TXT
Processed data included within Sample table

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