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Sample GSM115039 Query DataSets for GSM115039
Status Public on Jun 21, 2006
Title Kidney sample from brain dead donor(6hrs after induction of brain death) BD2
Sample type RNA
 
Channel 1
Source name BD2 with Cy3
Organism Rattus norvegicus
Characteristics Kidney sample from brain dead donor(6hrs after induction of brain death) BD2
Extracted molecule total RNA
Label Cy3
 
Channel 2
Source name normal control with Cy5
Organism Rattus norvegicus
Characteristics A mixture of kidney tissue from normal rats
Extracted molecule total RNA
Label Cy5
 
 
Description Kidney sample was obtained 1 hr after transplantation from brain dead donor (6hrs after induction of brain death).
A mixture of 3 normal kidney samples was used for a template control.
Data processing Data processed with FeatureExrtraction v7.1
 
Submission date Jun 19, 2006
Last update date Mar 29, 2007
Contact name Mamoru Kusaka
E-mail(s) [email protected]
Phone 81-562-93-2181
Fax 81-562-93-7863
Organization name Fujita-Health University
Department Department of Urology
Street address 1-98 Kutsukake
City Toyoake
State/province Aichi
ZIP/Postal code 470-1192
Country Japan
 
Platform ID GPL890
Series (1)
GSE5104 Genome-wide expression profile in rat model of renal isografts from brain dead donors

Data table header descriptions
ID_REF
VALUE -[INV_VALUE]; normalized log10 ratio of (test/control)
PValueLogRatio p-value of the log ratio as determined by Agilent error model
gProcessedSignal normalized and background subtracted Cy3 (green) signal
rProcessedSignal normalized and background subtracted Cy5 (red) signal
gMeanSignal raw Cy3 (green) signal intensity
rMeanSignal raw Cy5 (red) signal intensity
INV_VALUE Log10 Ratio of normalized Cy5 (red) signal to normalized Cy3 (green) signal

Data table
ID_REF VALUE PValueLogRatio gProcessedSignal rProcessedSignal gMeanSignal rMeanSignal INV_VALUE
1 0.921 1.95E-27 3.88E+03 4.66E+02 8.45E+02 1.99E+02 -9.21E-01
2 0.47 5.26E-01 3.40E+01 1.15E+01 8.49E+01 4.99E+01 -4.70E-01
3 0.0496 4.26E-01 4.25E+02 3.79E+02 1.65E+02 1.69E+02 -4.96E-02
4 0.0356 6.05E-01 3.32E+02 3.06E+02 1.47E+02 1.45E+02 -3.56E-02
5 -0.0454 4.82E-01 3.50E+02 3.89E+02 1.51E+02 1.72E+02 4.54E-02
6 -0.00446 9.41E-01 4.36E+02 4.41E+02 1.67E+02 1.89E+02 4.46E-03
7 1.74 5.33E-34 3.24E+03 5.93E+01 7.25E+02 6.94E+01 -1.74E+00
8 0.0035 9.48E-01 7.42E+02 7.36E+02 2.27E+02 2.85E+02 -3.50E-03
9 -0.0747 8.36E-01 3.93E+01 4.67E+01 8.89E+01 6.56E+01 7.47E-02
10 -0.046 3.67E-01 1.12E+03 1.25E+03 3.03E+02 4.48E+02 4.60E-02
11 0.145 2.81E-01 1.44E+02 1.03E+02 1.11E+02 8.23E+01 -1.45E-01
12 0.138 3.44E-02 4.26E+02 3.10E+02 1.67E+02 1.48E+02 -1.38E-01
13 0.0398 4.26E-01 1.78E+03 1.62E+03 4.32E+02 5.67E+02 -3.98E-02
14 1.71 5.00E-34 3.58E+03 6.98E+01 7.90E+02 7.28E+01 -1.71E+00
15 0.14 5.24E-03 1.98E+04 1.43E+04 4.03E+03 4.53E+03 -1.40E-01
16 0.0122 8.38E-01 4.56E+02 4.43E+02 1.73E+02 1.91E+02 -1.22E-02
17 0.0372 5.83E-01 3.44E+02 3.16E+02 1.53E+02 1.49E+02 -3.72E-02
18 0.241 1.58E-01 1.23E+02 7.05E+01 1.07E+02 7.20E+01 -2.41E-01
19 0.0327 5.18E-01 1.35E+03 1.25E+03 3.49E+02 4.48E+02 -3.27E-02
20 0.291 2.55E-01 8.43E+01 4.32E+01 9.96E+01 6.43E+01 -2.91E-01

Total number of rows: 21575

Table truncated, full table size 1415 Kbytes.




Supplementary data files not provided
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