NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM118463 Query DataSets for GSM118463
Status Public on Aug 31, 2006
Title Yeast yox1yhp1 mutant cell cycle-time point 0 min 2001-04-12_2665-0
Sample type RNA
 
Channel 1
Source name Yeast yox1yhp1 mutant cell cycle-time point 0 min
Organism Saccharomyces cerevisiae
Characteristics Yeast yox1yhp1 mutant cell cycle-time point 0 min
Treatment protocol Cells were arrested with alpha factor,and released into YEPD to get a synchronized population. Cells were sampled every 10 min after relase.
Extracted molecule total RNA
Label Cy5
 
Channel 2
Source name Yeast (wild type) asynchronous culture
Organism Saccharomyces cerevisiae
Characteristics Yeast (wild type) asynchronous culture
Treatment protocol Cells were grown overnight to an OD of 0.6 in YEPD
Extracted molecule total RNA
Label Cy3
 
 
Description Yeast yox1yhp1 mutant cell cycle
Data processing log10 ratio of medians[(F635-B635)/(F532-BF532)], normalized
 
Submission date Jul 05, 2006
Last update date Jul 11, 2006
Contact name Tata Pramila
E-mail(s) [email protected]
Phone (206)6674483
Organization name FHCRC
Department Basic Sciences
Lab Breeden Lab
Street address 1100, Fairview Avenue N
City Seattle
State/province WA
ZIP/Postal code 98109
Country USA
 
Platform ID GPL1914
Series (1)
GSE5283 Yeast W303 yox1yhp1 mutant cell cycle

Data table header descriptions
ID_REF Array identifier
VALUE same as UNF_VALUE but with flagged values removed
Ratio
Flagged? FALSE for good spot and TRUE for bad spot
UNF_VALUE Normalized, log10 ratio of medians defined as Ch1 divided by Ch2[(F635-B635)/(F532-BF532)]

Data table
ID_REF VALUE Ratio Flagged? UNF_VALUE
blank 0.069322102 1.173065066 FALSE 0.069322102
E. coli control 0.176213339 1.500421763 FALSE 0.176213339
empty 0.485529155 TRUE -0.313784689
Human Control 0.029901912 1.07127738 FALSE 0.029901912
Lambda Control 0.129773855 1.348260641 FALSE 0.129773855
n1 0.040118188 1.096776605 FALSE 0.040118188
n2 0.018755756 1.044132829 FALSE 0.018755756
p1 0.030179946 1.07196343 FALSE 0.030179946
p2 0.039495923 1.095206261 FALSE 0.039495923
Phi174 Control 0.101535536 1.263384461 FALSE 0.101535536
YAL001C -0.047286313 0.896837354 FALSE -0.047286313
YAL002W 0.044621024 1.108207345 FALSE 0.044621024
YAL003W -0.066157013 0.858703017 FALSE -0.066157013
YAL004W -0.143892184 0.717972517 FALSE -0.143892184
YAL005C -0.041540109 0.908782363 FALSE -0.041540109
YAL007C -0.1491047 0.709406734 FALSE -0.1491047
YAL008W 0.027060779 1.064291954 FALSE 0.027060779
YAL009W 0.06375514 1.158124209 FALSE 0.06375514
YAL010C -0.052450229 0.886236787 FALSE -0.052450229
YAL011W 0.05800293 1.142886043 FALSE 0.05800293

Total number of rows: 6228

Table truncated, full table size 307 Kbytes.




Supplementary file Size Download File type/resource
GSM118463.gpr.gz 485.6 Kb (ftp)(http) GPR

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap