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GEO accession:
Sample GSM120036
Query DataSets for GSM120036
Status
Public on Sep 30, 2007
Title
2001-08-15_2399-0
Sample type
RNA
Channel 1
Source name
Yeast yox1mutant cell cycle-time point 0 min
Organism
Saccharomyces cerevisiae
Characteristics
Yeast yox1 mutant cell cycle-time point 0 min
Treatment protocol
Cells were arrested with alpha factor,and released into YEPD to get a synchronized population. Cells were sampled every 10 min after relase.
Extracted molecule
total RNA
Label
Cy5
Channel 2
Source name
Yeast (wild type) asynchronous culture
Organism
Saccharomyces cerevisiae
Characteristics
Yeast (wild type) asynchronous culture
Treatment protocol
Cells were grown overnight to an OD of 0.6 in YEPD
Extracted molecule
total RNA
Label
Cy3
Description
Yeast yox1 mutant cell cycle
Data processing
log10 ratio of medians[(F635-B635)/(F532-BF532)], normalized
Submission date
Jul 12, 2006
Last update date
Mar 21, 2007
Contact name
Tata Pramila
E-mail(s)
[email protected]
Phone
(206)6674483
Organization name
FHCRC
Department
Basic Sciences
Lab
Breeden Lab
Street address
1100, Fairview Avenue N
City
Seattle
State/province
WA
ZIP/Postal code
98109
Country
USA
Platform ID
GPL1914
Series (1)
GSE5376
Cell cycle of yeast deleted for yox1
Data table header descriptions
ID_REF
Array identifier
VALUE
same as UNF_VALUE but with flagged values removed
FLAG
UNF_VALUE
Normalized, log10 ratio of medians defined as Ch1 divided by Ch2[(F635-B635)/(F532-BF532)]
Data table
ID_REF
VALUE
FLAG
UNF_VALUE
blank
0.10841503
FALSE
0.10841503
E. coli control
TRUE
0.077735193
empty
TRUE
0.041740831
Human Control
TRUE
-0.280593723
Lambda Control
TRUE
-0.267082512
n1
0.075213261
FALSE
0.075213261
n2
0.017924953
FALSE
0.017924953
p1
0.096713372
FALSE
0.096713372
p2
0.050361123
FALSE
0.050361123
Phi174 Control
TRUE
-0.14261885
YAL001C
0.098210111
FALSE
0.098210111
YAL002W
0.114207372
FALSE
0.114207372
YAL003W
0.014016914
FALSE
0.014016914
YAL004W
-0.715030432
FALSE
-0.715030432
YAL005C
0.0491466
FALSE
0.0491466
YAL007C
-0.043404095
FALSE
-0.043404095
YAL008W
0.134894744
FALSE
0.134894744
YAL009W
-0.001652672
FALSE
-0.001652672
YAL010C
0.000336387
FALSE
0.000336387
YAL011W
0.01864323
FALSE
0.01864323
Total number of rows:
6228
Table truncated, full table size
231 Kbytes
.
Supplementary file
Size
Download
File type/resource
GSM120036.gpr.gz
486.6 Kb
(ftp)
(http)
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