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GEO accession:
Sample GSM120051
Query DataSets for GSM120051
Status
Public on Sep 30, 2007
Title
2001-08-16_2399-75
Sample type
RNA
Channel 1
Source name
Yeast yox1mutant cell cycle-time point 75 min
Organism
Saccharomyces cerevisiae
Characteristics
Yeast yox1 mutant cell cycle-time point 75 min
Treatment protocol
Cells were arrested with alpha factor,and released into YEPD to get a synchronized population. Cells were sampled every 10 min after relase.
Extracted molecule
total RNA
Label
Cy5
Channel 2
Source name
Yeast (wild type) asynchronous culture
Organism
Saccharomyces cerevisiae
Characteristics
Yeast (wild type) asynchronous culture
Treatment protocol
Cells were grown overnight to an OD of 0.6 in YEPD
Extracted molecule
total RNA
Label
Cy3
Description
Yeast yox1 mutant cell cycle
Data processing
log10 ratio of medians[(F635-B635)/(F532-BF532)], normalized
Submission date
Jul 12, 2006
Last update date
Mar 21, 2007
Contact name
Tata Pramila
E-mail(s)
[email protected]
Phone
(206)6674483
Organization name
FHCRC
Department
Basic Sciences
Lab
Breeden Lab
Street address
1100, Fairview Avenue N
City
Seattle
State/province
WA
ZIP/Postal code
98109
Country
USA
Platform ID
GPL1914
Series (1)
GSE5376
Cell cycle of yeast deleted for yox1
Data table header descriptions
ID_REF
Array identifier
VALUE
same as UNF_VALUE but with flagged values removed
FLAG
UNF_VALUE
Normalized, log10 ratio of medians defined as Ch1 divided by Ch2[(F635-B635)/(F532-BF532)]
Data table
ID_REF
VALUE
FLAG
UNF_VALUE
blank
0.169987336
FALSE
0.169987336
E. coli control
TRUE
0.852825582
empty
TRUE
1.660265088
Human Control
-0.28164655
FALSE
-0.28164655
Lambda Control
TRUE
1.81513536
n1
0.020032635
FALSE
0.020032635
n2
-0.033456989
FALSE
-0.033456989
p1
0.037912928
FALSE
0.037912928
p2
0.008956217
FALSE
0.008956217
Phi174 Control
TRUE
2
YAL001C
-0.012199504
FALSE
-0.012199504
YAL002W
-0.026091781
FALSE
-0.026091781
YAL003W
-0.009960426
FALSE
-0.009960426
YAL004W
-0.146031499
FALSE
-0.146031499
YAL005C
-0.0102369
FALSE
-0.0102369
YAL007C
0.038861401
FALSE
0.038861401
YAL008W
-0.060519785
FALSE
-0.060519785
YAL009W
0.068074808
FALSE
0.068074808
YAL010C
0.013756323
FALSE
0.013756323
YAL011W
0.060568519
FALSE
0.060568519
Total number of rows:
6228
Table truncated, full table size
232 Kbytes
.
Supplementary file
Size
Download
File type/resource
GSM120051.gpr.gz
500.0 Kb
(ftp)
(http)
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