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Sample GSM120060 Query DataSets for GSM120060
Status Public on Sep 30, 2007
Title 2001-08-15_2399-120
Sample type RNA
 
Channel 1
Source name Yeast yox1mutant cell cycle-time point 120 min
Organism Saccharomyces cerevisiae
Characteristics Yeast yox1 mutant cell cycle-time point 120 min
Treatment protocol Cells were arrested with alpha factor,and released into YEPD to get a synchronized population. Cells were sampled every 10 min after relase.
Extracted molecule total RNA
Label Cy5
 
Channel 2
Source name Yeast (wild type) asynchronous culture
Organism Saccharomyces cerevisiae
Characteristics Yeast (wild type) asynchronous culture
Treatment protocol Cells were grown overnight to an OD of 0.6 in YEPD
Extracted molecule total RNA
Label Cy3
 
 
Description Yeast yox1 mutant cell cycle
Data processing log10 ratio of medians[(F635-B635)/(F532-BF532)], normalized
 
Submission date Jul 12, 2006
Last update date Mar 21, 2007
Contact name Tata Pramila
E-mail(s) [email protected]
Phone (206)6674483
Organization name FHCRC
Department Basic Sciences
Lab Breeden Lab
Street address 1100, Fairview Avenue N
City Seattle
State/province WA
ZIP/Postal code 98109
Country USA
 
Platform ID GPL1914
Series (1)
GSE5376 Cell cycle of yeast deleted for yox1

Data table header descriptions
ID_REF Array identifier
VALUE same as UNF_VALUE but with flagged values removed
FLAG
UNF_VALUE Normalized, log10 ratio of medians defined as Ch1 divided by Ch2[(F635-B635)/(F532-BF532)]

Data table
ID_REF VALUE FLAG UNF_VALUE
blank -0.051257394 FALSE -0.051257394
E. coli control 0.209724516 FALSE 0.209724516
empty TRUE 1.728331327
Human Control -0.219844371 FALSE -0.219844371
Lambda Control 2 FALSE 2
n1 0.005455436 FALSE 0.005455436
n2 -0.020212537 FALSE -0.020212537
p1 -0.039025273 FALSE -0.039025273
p2 -0.046521206 FALSE -0.046521206
Phi174 Control TRUE 0.953551829
YAL001C TRUE 0.051593348
YAL002W -0.028651122 FALSE -0.028651122
YAL003W 0.078251392 FALSE 0.078251392
YAL004W -0.028450642 FALSE -0.028450642
YAL005C 0.048922777 FALSE 0.048922777
YAL007C 0.067884266 FALSE 0.067884266
YAL008W 0.005940808 FALSE 0.005940808
YAL009W 0.12238735 FALSE 0.12238735
YAL010C TRUE -0.005918907
YAL011W -0.006494757 FALSE -0.006494757

Total number of rows: 6228

Table truncated, full table size 231 Kbytes.




Supplementary file Size Download File type/resource
GSM120060.gpr.gz 492.4 Kb (ftp)(http) GPR

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