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GEO accession:
Sample GSM120182
Query DataSets for GSM120182
Status
Public on Sep 30, 2007
Title
2002-01-10_2399-75
Sample type
RNA
Channel 1
Source name
Yeast yox1mutant cell cycle-time point 0 min
Organism
Saccharomyces cerevisiae
Characteristics
Yeast yox1 mutant cell cycle-time point 0 min
Treatment protocol
Cells were arrested with alpha factor,and released into YEPD to get a synchronized population. Cells were sampled every 10 min after relase.
Extracted molecule
total RNA
Label
Cy5
Channel 2
Source name
Yeast (wild type) asynchronous culture
Organism
Saccharomyces cerevisiae
Characteristics
Yeast (wild type) asynchronous culture
Treatment protocol
Cells were grown overnight to an OD of 0.6 in YEPD
Extracted molecule
total RNA
Label
Cy3
Description
Yeast yox1 mutant cell cycle
Data processing
log10 ratio of medians[(F635-B635)/(F532-BF532)], normalized
Submission date
Jul 13, 2006
Last update date
Mar 21, 2007
Contact name
Tata Pramila
E-mail(s)
[email protected]
Phone
(206)6674483
Organization name
FHCRC
Department
Basic Sciences
Lab
Breeden Lab
Street address
1100, Fairview Avenue N
City
Seattle
State/province
WA
ZIP/Postal code
98109
Country
USA
Platform ID
GPL1914
Series (1)
GSE5376
Cell cycle of yeast deleted for yox1
Data table header descriptions
ID_REF
Array identifier
VALUE
same as UNF_VALUE but with flagged values removed
RATIO
FLAG
UNF_VALUE
Normalized, log10 ratio of medians defined as Ch1 divided by Ch2[(F635-B635)/(F532-BF532)]
Data table
ID_REF
VALUE
RATIO
FLAG
UNF_VALUE
blank
0.014186621
1.033205271
FALSE
0.014186621
E. coli control
0.674949944
TRUE
-0.17072843
empty
0.703326166
TRUE
-0.152843222
Human Control
-0.191610217
0.643264771
FALSE
-0.191610217
Lambda Control
-0.275156319
0.530693412
FALSE
-0.275156319
n1
0.04282653
1.103637695
FALSE
0.04282653
n2
0.03033804
1.072353721
FALSE
0.03033804
p1
0.019385601
1.045648217
FALSE
0.019385601
p2
0.015083487
1.035341144
FALSE
0.015083487
Phi174 Control
0.01
TRUE
-2
YAL001C
-0.06426499
0.862452149
FALSE
-0.06426499
YAL002W
0.032423616
1.077515721
FALSE
0.032423616
YAL003W
0.023367303
1.055279017
FALSE
0.023367303
YAL004W
-0.047527071
0.896340311
FALSE
-0.047527071
YAL005C
-0.006232182
0.985752344
FALSE
-0.006232182
YAL007C
-0.038137447
0.915930569
FALSE
-0.038137447
YAL008W
0.919464469
TRUE
-0.036465049
YAL009W
0.046234008
1.112330914
FALSE
0.046234008
YAL010C
-0.11578311
0.765979052
FALSE
-0.11578311
YAL011W
-0.083745815
0.824620605
FALSE
-0.083745815
Total number of rows:
6228
Table truncated, full table size
304 Kbytes
.
Supplementary file
Size
Download
File type/resource
GSM120182.gpr.gz
494.1 Kb
(ftp)
(http)
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