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GEO accession:
Sample GSM120183
Query DataSets for GSM120183
Status
Public on Sep 30, 2007
Title
2002-01-10_2399-80
Sample type
RNA
Channel 1
Source name
Yeast yox1mutant cell cycle-time point 80 min
Organism
Saccharomyces cerevisiae
Characteristics
Yeast yox1 mutant cell cycle-time point 80 min
Treatment protocol
Cells were arrested with alpha factor,and released into YEPD to get a synchronized population. Cells were sampled every 10 min after relase.
Extracted molecule
total RNA
Label
Cy5
Channel 2
Source name
Yeast (wild type) asynchronous culture
Organism
Saccharomyces cerevisiae
Characteristics
Yeast (wild type) asynchronous culture
Treatment protocol
Cells were grown overnight to an OD of 0.6 in YEPD
Extracted molecule
total RNA
Label
Cy3
Description
Yeast yox1 mutant cell cycle
Data processing
log10 ratio of medians[(F635-B635)/(F532-BF532)], normalized
Submission date
Jul 13, 2006
Last update date
Mar 21, 2007
Contact name
Tata Pramila
E-mail(s)
[email protected]
Phone
(206)6674483
Organization name
FHCRC
Department
Basic Sciences
Lab
Breeden Lab
Street address
1100, Fairview Avenue N
City
Seattle
State/province
WA
ZIP/Postal code
98109
Country
USA
Platform ID
GPL1914
Series (1)
GSE5376
Cell cycle of yeast deleted for yox1
Data table header descriptions
ID_REF
Array identifier
VALUE
same as UNF_VALUE but with flagged values removed
RATIO
FLAG
UNF_VALUE
Normalized, log10 ratio of medians defined as Ch1 divided by Ch2[(F635-B635)/(F532-BF532)]
Data table
ID_REF
VALUE
RATIO
FLAG
UNF_VALUE
blank
0.020176632
1.047554493
FALSE
0.020176632
E. coli control
0.499458164
3.158334732
FALSE
0.499458164
empty
1.421837568
TRUE
0.152849987
Human Control
0.228908911
1.693982482
FALSE
0.228908911
Lambda Control
0.123112865
1.327739477
FALSE
0.123112865
n1
0.008329251
1.01936388
FALSE
0.008329251
n2
0.002822542
1.006520271
FALSE
0.002822542
p1
-0.007567217
0.982726753
FALSE
-0.007567217
p2
-0.00408998
0.990626693
FALSE
-0.00408998
Phi174 Control
0.227196589
1.687316656
FALSE
0.227196589
YAL001C
-0.043494046
0.904702842
FALSE
-0.043494046
YAL002W
-0.031693805
0.929621577
FALSE
-0.031693805
YAL003W
0.014776385
1.034609318
FALSE
0.014776385
YAL004W
-0.168973342
0.677683115
FALSE
-0.168973342
YAL005C
-0.088538475
0.815570533
FALSE
-0.088538475
YAL007C
-0.005386773
0.987673104
FALSE
-0.005386773
YAL008W
0.003091096
1.007142901
FALSE
0.003091096
YAL009W
0.059317697
1.146351218
FALSE
0.059317697
YAL010C
0.056212138
1.138183117
FALSE
0.056212138
YAL011W
-0.093092509
0.807063103
FALSE
-0.093092509
Total number of rows:
6228
Table truncated, full table size
305 Kbytes
.
Supplementary file
Size
Download
File type/resource
GSM120183.gpr.gz
491.6 Kb
(ftp)
(http)
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