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Sample GSM142569 Query DataSets for GSM142569
Status Public on Sep 10, 2008
Title mPB CD34+CD38- cells, biological replicate 2
Sample type RNA
 
Source name mobilized peripheral blood
Organism Homo sapiens
Characteristics CD34+CD38- cells
Extracted molecule total RNA
Extraction protocol Rneasy colums (Qiagen)
Label biotin
Label protocol biotinylated cRNA
 
Hybridization protocol following fragmentation 10 ug cRNA was hybridized at 45 C for 16 hours with constant rotation at 60 rpm
Scan protocol Scanning was performed as described in the GeneChip Expression Analysis technical manual
Description Gene expression data from CD34+CD38- cells isolated from normal human Bone Marrow
Data processing The data were analyzed with GCOS using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 1000.
 
Submission date Oct 27, 2006
Last update date Mar 01, 2008
Contact name Arnolda de Nooij-van Dalen
Organization name LUMC
Department Hematology
Lab Experimental Hematology
Street address Albinusdreef 2
City Leiden
ZIP/Postal code 2333 ZA
Country Netherlands
 
Platform ID GPL96
Series (1)
GSE6146 Expression data from CD34+CD38- stem cells and more differentiated CD34+CD38+ progenitor cellsmbryo

Data table header descriptions
ID_REF
VALUE GCOS normalized signal
ABS_CALL
DETECTION P-VALUE

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 762.9 P 0.003595
AFFX-BioB-M_at 1533.6 P 0.000110
AFFX-BioB-3_at 640.7 P 0.000581
AFFX-BioC-5_at 2305.4 P 0.000147
AFFX-BioC-3_at 1523.3 P 0.000110
AFFX-BioDn-5_at 2223.9 P 0.000070
AFFX-BioDn-3_at 12459.1 P 0.000095
AFFX-CreX-5_at 19549.6 P 0.000044
AFFX-CreX-3_at 30471.8 P 0.000044
AFFX-DapX-5_at 60.3 A 0.175328
AFFX-DapX-M_at 78.5 A 0.313723
AFFX-DapX-3_at 7.4 A 0.973889
AFFX-LysX-5_at 5.0 A 0.876428
AFFX-LysX-M_at 16.2 A 0.772364
AFFX-LysX-3_at 7.4 A 0.737173
AFFX-PheX-5_at 5.9 A 0.941556
AFFX-PheX-M_at 10.3 A 0.916408
AFFX-PheX-3_at 94.2 A 0.470238
AFFX-ThrX-5_at 19.4 A 0.834139
AFFX-ThrX-M_at 27.6 A 0.603080

Total number of rows: 22283

Table truncated, full table size 608 Kbytes.




Supplementary file Size Download File type/resource
GSM142569.CEL.gz 2.1 Mb (ftp)(http) CEL
GSM142569.EXP.gz 379 b (ftp)(http) EXP

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