NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM142574 Query DataSets for GSM142574
Status Public on Sep 10, 2008
Title UCB CD34+CD38+ cells, biological replicate 2
Sample type RNA
 
Source name umbilical cord blood
Organism Homo sapiens
Characteristics CD34+CD38+ cells
Extracted molecule total RNA
Extraction protocol Rneasy colums (Qiagen)
Label biotin
Label protocol biotinylated cRNA
 
Hybridization protocol following fragmentation 10 ug cRNA was hybridized at 45 C for 16 hours with constant rotation at 60 rpm
Scan protocol Scanning was performed as described in the GeneChip Expression Analysis technical manual
Description Gene expression data from CD34+CD38- cells isolated from normal human Bone Marrow
Data processing The data were analyzed with GCOS using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 1000.
 
Submission date Oct 27, 2006
Last update date Mar 01, 2008
Contact name Arnolda de Nooij-van Dalen
Organization name LUMC
Department Hematology
Lab Experimental Hematology
Street address Albinusdreef 2
City Leiden
ZIP/Postal code 2333 ZA
Country Netherlands
 
Platform ID GPL96
Series (1)
GSE6146 Expression data from CD34+CD38- stem cells and more differentiated CD34+CD38+ progenitor cellsmbryo

Data table header descriptions
ID_REF
VALUE GCOS normalized signal
ABS_CALL
DETECTION P-VALUE

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 557.9 P 0.002867
AFFX-BioB-M_at 865.8 P 0.000258
AFFX-BioB-3_at 512.9 P 0.000857
AFFX-BioC-5_at 1978.5 P 0.000095
AFFX-BioC-3_at 1483.3 P 0.000258
AFFX-BioDn-5_at 1652.7 P 0.000081
AFFX-BioDn-3_at 11377.5 P 0.000070
AFFX-CreX-5_at 17035.5 P 0.000044
AFFX-CreX-3_at 27500.9 P 0.000044
AFFX-DapX-5_at 62.3 M 0.050229
AFFX-DapX-M_at 77.5 A 0.411380
AFFX-DapX-3_at 8.9 A 0.963431
AFFX-LysX-5_at 33.1 A 0.686277
AFFX-LysX-M_at 21.5 A 0.544587
AFFX-LysX-3_at 34.5 A 0.440646
AFFX-PheX-5_at 9.5 A 0.932322
AFFX-PheX-M_at 11.6 A 0.891021
AFFX-PheX-3_at 132.7 A 0.327079
AFFX-ThrX-5_at 15.4 A 0.843268
AFFX-ThrX-M_at 59.3 A 0.544587

Total number of rows: 22283

Table truncated, full table size 608 Kbytes.




Supplementary file Size Download File type/resource
GSM142574.CEL.gz 2.1 Mb (ftp)(http) CEL
GSM142574.EXP.gz 498 b (ftp)(http) EXP

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap